FastQCFastQC Report
Thu 9 Feb 2023
EGAF00001878364

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001878364
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114383234
Sequences flagged as poor quality0
Sequence length126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTACTTTCAACAAAATCAGCAGCTAATGAAGGCAAGTCAGCAGGCATCT2026850.1771981722426208No Hit
CCCAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACG1439640.12586110303543263No Hit
CTCCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTA1360390.11893264007555512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)