FastQCFastQC Report
Wed 8 Feb 2023
EGAF00001878365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001878365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114383234
Sequences flagged as poor quality0
Sequence length126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT2375170.2076501876140344No Hit
CCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTT1729500.15120222951555995No Hit
CACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCT1289710.11275341279474577No Hit
CGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCTCT1289290.11271669412669344No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)