FastQCFastQC Report
Thu 16 Mar 2023
EGAF00001878435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001878435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60211768
Sequences flagged as poor quality0
Sequence length126
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG810780.13465474058160856Illumina Single End PCR Primer 1 (100% over 50bp)
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT802750.1333211142380008Illumina Single End PCR Primer 1 (100% over 50bp)
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT686170.11395945058447711No Hit
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN619430.10287523860784158No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)