FastQCFastQC Report
Thu 19 Jan 2023
EGAF00001878601

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001878601
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences202624932
Sequences flagged as poor quality0
Sequence length126
%GC48

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT4195500.20705744148010372No Hit
CACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCT4155880.20510210461168718No Hit
CCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTT3658690.18056465035605787No Hit
CACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTT2598420.12823792088922206No Hit
CTGAAACATTCACCTTCCATGCAGATATATGCACACTTTCTGAGAAGGAG2288580.11294661409189269No Hit
CGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCTCT2094000.10334364973408108No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)