FastQCFastQC Report
Sat 1 Apr 2023
EGAF00001878652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001878652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27295305
Sequences flagged as poor quality0
Sequence length50
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTTCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTA1076270.39430590718806774No Hit
GACGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCC497000.18208259625602277TruSeq Adapter, Index 2 (100% over 48bp)
AATTAATTAATTAATTAATTAATTAATTAATTAATTAATTAATTAATTAA369120.1352320481489399No Hit
TAATTAATTAATTAATTAATTAATTAATTAATTAATTAATTAATTAATTA326600.11965427753967212No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)