FastQCFastQC Report
Mon 23 Jan 2023
EGAF00001878725

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001878725
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences150809519
Sequences flagged as poor quality0
Sequence length126
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3756250.2490724739994695No Hit
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT2045110.13560881392374177No Hit
CCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTT1863640.12357575386206227No Hit
GTTTCGTCGAGATGCACACAAGAGTGAGGTTGCTCATCGGTTTAAAGATT1517200.10060372913197874No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)