FastQCFastQC Report
Sat 21 Jan 2023
EGAF00001878788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001878788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences242224695
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTACTTTCAACAAAATCAGCAGCTAATGAAGGCAAGTCAGCAGGCATCT5181160.21389891728421828No Hit
CTCAGGTTCTTGTTTTGCACAGCAGTCAGCCATTTCACCATAGGTTTCAC2894460.1194948351570842No Hit
CAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACGAA2886710.1191748842949312No Hit
CTCCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTA2762670.11405401914119451No Hit
CTCTTTTGTTGCCTTGGGCTTGTGTTTCACAAGCTCAACAAGTGCAGTTT2697100.11134702842746896No Hit
CTTCAGTTTACTGGAGATCGAATCTTGATTTTCACAGATATACTTGGCAA2510070.10362568523411703No Hit
CTCTTTTGTTGCCTTGGGCTTGTGTTTCACGAGCTCAACAAGTGCAGTTT2500540.10323224888362437No Hit
CTTGATTTGTCTCTCCTTCTCAGAAAGTGTGCATATATCTGCATGGAAGG2427550.1002189310218762No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)