FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001878905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001878905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9196751
Sequences flagged as poor quality0
Sequence length126
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT283800.3085872391239036No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATT165560.1800200962274612No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA135390.1472150327871223No Hit
GTCCAAGTGGCATAGGGGAGCTTAGGGCTCTGCCCCATGATGTACAGTCC119730.13018728026886886No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATT116940.12715360022251337No Hit
GCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATATCA111940.12171689763047842No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCG110290.1199227857751069No Hit
GTCCAAGTGGCGTAGGGGAGCATAGGGCTCTGCCCCATGATGTACAAGTC99990.10872317843551489No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)