FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001878929

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001878929
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6024525
Sequences flagged as poor quality0
Sequence length126
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT165820.2752416165589818No Hit
GCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATATCA95060.15778837335723564No Hit
CTTCAAGAACAAATATGAGGATGAAATCAACAAGCGCACAGCAGCAGAGA93140.15460140011038215No Hit
AATCAACAAGCGCACAGCAGCAGAGAATGAATTTGTGACTCTGAAGAAGG92880.1541698308165374No Hit
AGGATGTGGATGCTGCCTACATGAACAAGGTTGAACTGCAAGCCAAGGCA82870.1375544130035148No Hit
CAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGTTGATC78400.13013474091318403No Hit
GCAGGACCTGGTGGAGGACTTCAAGAACAAATATGAGGATGAAATCAACA75830.12586884443171867No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA69850.11594275067328959No Hit
GGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGTTGA67760.11247359750353762No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG66010.10956880417958262No Hit
AGGACTTCAAGAACAAATATGAGGATGAAATCAACAAGCGCACAGCAGCA61120.10145198169150264No Hit
CCTGGACTCAGAGCTCAGAGGCATGCAGGACCTGGTGGAGGACTTCAAGA60340.10015727380996843No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)