FastQCFastQC Report
Fri 9 Sep 2022
EGAF00001878979

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001878979
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2166745
Sequences flagged as poor quality0
Sequence length126
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTGGTCCTGGAACTACTCCCAGCCCTGTTCCCACCACCAGCACAACCT79950.3689866597130719No Hit
CCTCTGGTCCTGGAACTACTCCCAGCCCTGTTCCCACCACCAGCACAACC54360.25088323729834383No Hit
CTCCCAGCCCTGTTCCCACCACCAGCACAACCTCTGCTCCTACAACCAGC45790.21133082111646734No Hit
GGAACTACTCCCAGCCCTGTTCCCACCACCAGCACAACCTCTGCTCCTAC44730.20643869029350476No Hit
CCTGAAGATGCCCAAGATGAAAATGCCCAAGTTCAGCATGCCTGGCTTCA44440.2051002771438263No Hit
CCTGGAACTACTCCCAGCCCTGTTCCCACCACCAGCACAACCTCTGCTCC39090.18040886214113797No Hit
CTTCCACCCTCAGCGGATGATAATCTCAAGACACCTTCCGAGCGTCAGCT37740.174178318168497No Hit
ACCAGCACAACCTCTGCTCCTATAACCAGCATGACCTCTGGTCCTGGAAC34780.16051727360626192No Hit
CAACCTCTGGTCCTGGAAGTACTCCCAGCCCTGTTCCCACCACCAGCACA34020.15700970811055293No Hit
GCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATATCA33290.15364059914756928No Hit
CAACCTCTGGTCCTGGAACTTCTCTCAGCCCTGTTCCCACCACGAGCACA30040.13864114143565578No Hit
TGGAACTACTCCCAGCCCTGTTCCCACCACCAGCACAACCTCTGCTCCTA29060.13411822803329418No Hit
CAACCTCTGGTCCTGGAACTACTCCCAGCCCTGTTCCCACCACCAGCACA29040.13402592367814395No Hit
CCTCTGCCTCTACAGCCAGCACAACCTCTGGTCCTGGAAGTACTCCCAGC27770.1281645971261039No Hit
CTACTCCCAGCCCTGTTCCCACCACCAGCACAACCTCTGCTCCTACAACC27550.12714924921945128No Hit
CCAGCACAACCTCTGCTCCTATAACCAGCATGACCTCTGGTCCTGGAACT26210.12096485742438542No Hit
GGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGAC25320.1168573136201999No Hit
CTCCCAGCCCTGTTCCCACCACCAGCACAACCTCTGCTCCTACAACCAGA25230.11644194402202382No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)