FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001879001

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001879001
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4867950
Sequences flagged as poor quality0
Sequence length126
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGATTCCCAGCTGTTTCTGCTTGCTGATCAGGACCGCACACAGAGAA178920.3675469139987058No Hit
GTTATCTTGAACTGCCTGACTTAGGCCAGCCCTACAGCAGTGCTGTTTAC124850.2564734641892378No Hit
TGTTATTCGACTCCTTCAGGTTATCTTGAACTGCCTGACTTAGGCCAGCC99560.20452141044998406No Hit
GCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATATCA89040.18291067081625736No Hit
GTTGTCTTGAACTGACTGACTCATGCCAGCCCTACAGAAGTGCCTTTTAT87010.17874053759796218No Hit
GGGGAAGAAAAGAAGGGGAAGAAGATCAAAACCCACCATGCCCCAGGCTC82590.16966074014728993No Hit
CTTGAACTGACTGACTCATGCCAGCCCTACAGAAGTGCCTTTTATGTATT81390.1671956367670169No Hit
CCCAGCTGTTTCTGCTTGCTGATCAGGACCGCACACAGAGAACTCACCAT71870.14763914995018437No Hit
AGAAGATCAAAACCCACCATGCCCCAGGCTCAGCAGGGAGCTGCTGGATG69130.14201049723189435No Hit
AGAAGATCAAAGAAGGAAAGAAGAAGGGGAAGAAAAGAAGGGGAAGAAGA67130.13790199159810598No Hit
GCCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCCA66140.13586828130938075No Hit
CTTGAACTGCCTGACTTAGGCCAGCCCTACAGCAGTGCTGTTTACTCATT65350.13424542158403435No Hit
AGTAGAGCCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTC63200.12982877802771187No Hit
TGTTATTCAACTCCTTCCAGTTGTCTTGAACAGCCTGACTCCTGCCAGCC60880.1250629114925174No Hit
CAGCTGTTTCTGCTTGCTGATCAGGACCGCACACAGAGAACTCACCATGG60850.12500128390801055No Hit
GTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCCAGTTGTCT59230.121673394344642No Hit
TGTTATTCAACTCCTTCAGGTTGTCTTGAACTGACTGACTCATGCCAGCC54780.11253196930946291No Hit
GAAAGAGCCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCGACTC51580.10595836029540155No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT51260.10530099939399541No Hit
CCTGGGATTCCCAGCTGTTTCTGCTTGCTGATCAGGACCGCACACAGAGA50910.10458201090808245No Hit
GGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGAC50720.10419170287287256No Hit
AGAGAACTCACCATGGAGTTTGGGCTGAGCTGGGTTTTCCTTGTTGCTAT50200.10312349140808759No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)