FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001879066

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001879066
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6036186
Sequences flagged as poor quality0
Sequence length126
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCATTCCACTTGCGAATAATTGTGCCGAGTTTTGCACCATACTTGAAT443040.7339734063860855No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTT122370.20272735134404407No Hit
GCCCAACCCAATCATTAACATCGTTTCCATTTTGAAACTGTCTTGGCCAA118250.1959018492803237No Hit
CTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTCCCCTTCTTTTCAATTT117350.1944108415479576No Hit
GCCCAACCCAATCGTTAACATCGTTTCCATTTTGAAACTGTCTTGGCCAA113580.18816517582460182No Hit
CAGTTCTTTAAGTAAGACATCTTCTCTCCATTCCACTTGCGAATAATTGT110350.18281411474066572No Hit
GGGGGCTTTAGCTGTTGGCAGCTATGGTGTTCTTAATCCATTTCACATAG96950.16061466628099266No Hit
GTCAGAAGGTACGAAACCCCAACCTTCTCCCCAGTTCTTTAAGTAAGACA90020.14913390674177368No Hit
CCCAGTTCTTTAAGTAAGACATCTTCTCTCCATTCCACTTGCGAATAATT86720.14366687838976466No Hit
CTTCTCTCCATTCCACTTGCGAATAATTGTGCCGAGTTTTGCACCATACT85490.14162916782219764No Hit
CTCGTTGATTGTCATGGTTATCCACAAAGACAAGCGCTCTGTCAGAAGGT80740.13375996034582102No Hit
GTCAAGAGCCAAGCCAAGGTACTGTTCCTCCAATGAGTAAACAGCACTGC75310.12476421369387888No Hit
CAATCATTAACATCGTTTCCATTTTGAAACTGTCTTGGCCAACGGTAGCT74480.1233891732295857No Hit
CAGTTCTTTAAGTAAGACATCTTCTCTCCATTCCACTTGCGAATAACTGT73980.12256083560049343No Hit
CTAGCATCCCAGAAGGTAAGAATAGAGGCTCCTCCAGCCCCATGTCCTCG71220.11798841188790404No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG70250.11638143688746502No Hit
GTTGATTGTCATGGTTATCCACAAAGACAAGCGCTCTGTCAGAAGGTACG69910.11581816729968229No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA67260.11142797786549322No Hit
CCCAACCCAATCATTAACATCGTTTCCATTTTGAAACTGTCTTGGCCAAC65820.10904236549370745No Hit
CTCAGTTCGACGAGGATGACGGTATAGAGTTTTCACTCATTTTGTTCAGC61490.10186896162576832No Hit
GTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGCTGTGT61110.1012394250276582No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)