FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001879067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001879067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6036186
Sequences flagged as poor quality0
Sequence length126
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAATTAAAAGCAGTGACTACTTTGGTAATGGCCGGGTGACAGAATTCA190860.3161930397771043No Hit
CTTTCATTTACCAGGAGGTAATTGATCTGGGTGGTGAGCCAATTAAAAGC148290.24566837403618777No Hit
CAGAATTCAAGTATGGTGCAAAACTCGGCACAATTATTCGCAAGTGGAAT131360.21762086191512323No Hit
CTTTGGTAATGGCCGGGTGACAGAATTCAAGTATGGTGCAAAACTCGGCA129650.21478794722362762No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT126350.20932091887161858No Hit
AATTGATCTGGGTGGTGAGCCAATTAAAAGCAGTGACTACTTTGGTAATG104330.1728409296863947No Hit
GGTAATTGATCTGGGTGGTGAGCCAATTAAAAGCAGTGACTACTTTGGTA85670.14192736936867087No Hit
CTAGGCTGTACAAAATGGCAGTTGGATTTATGCTTGCTCATCCTTACGGA80470.1333126580261112No Hit
TGACAATCAACGAGGACATGGGGCTGGAGGAGCCTCTATTCTTACCTTCT74230.12297500441503957No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATT72470.12005925596063474No Hit
GTAACTGGTTCCCTGCAGGAAGTAAACCTTTCATTTACCAGGAGGTAATT69290.11479102863960786No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)