FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001879131

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001879131
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5091089
Sequences flagged as poor quality0
Sequence length126
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGATAGATGTTATTCAACTCCTTCCAGTTGTCTTGAACAGCCTGACTC119480.23468456355801282No Hit
CTGGATAGATGTTATTCAACTCCTTCAGGTTGTCTTGAACTGACTGACTC69110.13574698851267383No Hit
CACTGGATAGATGTTATTCAACTCCTTCCAGTTGTCTTGAACAGCCTGAC68380.13431311061346599No Hit
AGAAGATCAAAGAAGGAAAGAAGAAGGGGAAGAAAAGAAGGGGAAGAAGA66470.13056145747992226No Hit
CAGCAGGGAGCTGCTGGAGGTAGTAGAGCCTGAAGTCTTGCAGGACTCAC54780.10759976892959443No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)