FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001879199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001879199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2973848
Sequences flagged as poor quality0
Sequence length126
%GC58

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCA210230.7069292041825944No Hit
CCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCACCACCAC130320.4382201107790311No Hit
CCCATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCAC123990.41693455751605324No Hit
CCCCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATC122680.4125294904110768No Hit
CCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCAC104200.35038778041110374No Hit
CACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCC91470.30758128861999673No Hit
CCCATCACCACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCAC87640.2947023519695694No Hit
CCCACCGGCACACAGACCCCAACATCGACACCCATCACCACCACCACCAC81820.2751317484955519No Hit
CACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCC80330.2701214049944718No Hit
CCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACAGACC76120.2559646626189368No Hit
CCCAACCCCAACACCCACCGGCACACAGACCCCAACCACGACACCCATCA75680.2544850980951279No Hit
CCCACCGGCACACAGACCCCAACATCGACACCCATCACCACCACCACTAC74770.25142508964815957No Hit
CACAGACCCCAACATCGACACCCATCACCACCACCACTACGGTGACCCCA70970.23864703239708285No Hit
CGGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACA69560.23390570062760438No Hit
CCCATCACCACCACCACCACGGTGACACCAACCCCAACACCCACCGGCAC64410.2165880704057504No Hit
CACAGACCCCAACATCGACACCCATCACCACCACCACCACGGTGACCCCA64030.2153102646806427No Hit
CCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCACCACC61680.20740804506484528No Hit
CCCACCGGCACACAGACCCCAACAACGACACCCATCAGCACCACCACCAC57570.1935875673538123No Hit
CAACCTCTGGTCCTGGAACTACTCCCAGCCCTGTTCCCACCACCAGCACA57310.19271327922610706No Hit
CAGACCCCAACATCGACACCCATCACCACCACCACTACGGTGACCCCAAC54160.18212094229429346No Hit
CCCACCGGCACACAGACCCCAACCACGACACCCATCACCACCACCACCAC53850.1810785218343372No Hit
CCACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCACACAGACC52820.1776149957899664No Hit
CACAGACCCCAACCACGACACCCATCACCACCACCACCACGGTGACCCCA52150.17536202253780286No Hit
CACAGACCCCAACAACGACACCCATCAGCACCACCACCACGGTGACCCCA51880.1744541079436474No Hit
CACCCATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGC51640.17364707274884258No Hit
CCCAACCCCAACACCCACCGGCACACAGACCCCAACAACGACACCCATCA51310.17253739935598592No Hit
CCCCAACCCCAACACCCACCGGCACACAGACCCCAACCACGACACCCATC49500.16645100892849937No Hit
CCCATCTCCACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCAC47590.1600283538365108No Hit
CCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCA47180.15864966871205255No Hit
CATCGACACCCATCACCACCACCACCACGGTGACCCCAACCCCAACACCC46740.15717010418824365No Hit
CATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACAC46590.15666570719149062No Hit
CTCTGGTCCTGGAACTACTCCCAGCCCTGTTCCCACCACCAGCACAACCT46380.15595955139603637No Hit
CAGACCCCAACATCGACACCCATCACCACCACCACCACGGTGACCCCAAC46040.1548162515367295No Hit
CAACCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCACC44050.14812458471313933No Hit
CCCCAACCCCAACACCCACCGGCACACAGACCCCAACAACGACACCCATC43990.14792282591443812No Hit
CTTCCACCCTCAGCGGATGATAATCTCAAGACACCTTCCGAGCGTCAGCT42180.14183643548695157No Hit
CCGACACCCATCACCACCACCACCACGGTGACCCCAACCCCAACACCCAC41890.14086126795989573No Hit
CAACGACACCCATCAGCACCACCACCACGGTGACCCCAACCCCAACACCC41880.14082764149344554No Hit
CCAACCCCAACACCCACCGGCACACAGACCCCAACCACGACACCCATCAC40910.13756587424777594No Hit
CAGACCCCAACCACGACACCCATCACCACCACCACCACGGTGACCCCAAC40810.1372296095832739No Hit
CAGACCCCAACAACGACACCCATCAGCACCACCACCACGGTGACCCCAAC39400.13248827781379546No Hit
CGACACCCATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACC38080.1280495842423688No Hit
CCCATCACCACCACTACGGTGACCCCAACCCCAACACCCACCAGCACACA37500.1260992491882571No Hit
CAGCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATAT37300.12542671985925305No Hit
CGGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCAACAACGACA37120.12482144346314943No Hit
CGACACCCATCAGCACCACCACCACGGTGACCCCAACCCCAACACCCACC36300.12206407321423288No Hit
GCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATATCA36270.12196319381488226No Hit
CTCAAGACACCTTCCGAGCGTCAGCTCACTCCCCTTCCACCCTCAGCTCC36120.12145879681812924No Hit
GCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACAGACC36010.12108890568717702No Hit
CATCGACACCCATCACCACCACCACTACGGTGACCCCAACCCCAACACCC35880.12065176162332439No Hit
CCAACACCCACCGGCACACAGACCCCAACCACGACACCCATCACCACCAC34970.117591753176356No Hit
CCCACCGGCACACAGAGTACAACCCTGACACCCATCACCACCACCACCAC34620.11641482685059897No Hit
CCCTGACACCCATCACCACCACCACCACGGTGACACCAACCCCAACACCC34510.11604493571964673No Hit
CCCCAACCCCAACACCCACCGGCACACAGACCCCAACCCCGACACCCATC34410.11570867105514472No Hit
CCCATCAGCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCAC34270.1152379005248419No Hit
CCCAACCCCAACACCCACCGGCACACAGACCCCAACCCCGACACCCATCA34180.11493526232679008No Hit
ACGACACCCATCAGCACCACCACCACGGTGACCCCAACCCCAACACCCAC32270.1085126072348015No Hit
CCAACACCCACCGGCACACAGACCCCAACAACGACACCCATCAGCACCAC31130.1046791900594785No Hit
CACAGACCCCAACCCCGACACCCATCACCACCACCACCACGGTGACCCCA31050.10441017832787688No Hit
CACCCACCGGCACACAGACCCCAACATCGACACCCATCACCACCACCACC31030.10434292539497647No Hit
CCCACCGGCACACAGACCCCAACCCCGACACCCATCACCACCACCACCAC30640.1030314932034186No Hit
CACCCACCGGCACACAGACCCCAACATCGACACCCATCACCACCACCACT30240.10168643454541053No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)