FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001879240

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001879240
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5104078
Sequences flagged as poor quality0
Sequence length126
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA209620.41069121592577545No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG148410.2907675000264494No Hit
GTCCACTTTGGGTCCTGAGACATCAATGTCAGCCTTGGGCAGGTTCACAT135500.2654739994177205No Hit
GTGGAAGCGGCCCCCGCAGACGCTCGGCAGGTGTCTTGATATTATCATCT116800.2288366282803672No Hit
GTGGAGCTGAGGGTGGAAGGGGAGTGAGCTGACGCTCGGAAGGTGTCTTG109020.21359391451306192No Hit
GGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCGGCC91880.18001292300000118No Hit
GTTCGATTAGTCTTTCGCCCCTATACCCAGGTCGGACGACCGATTTGCAC60990.11949268800359242No Hit
GTCCACGTCAAGAGCCAAGCCAAGGTACTGTTCCTCCAATGAGTAAACAG60820.11915962099325285No Hit
GCTGAGGGTGGAGCTGAGGGTGGAAGGGGAGTGAGCTGACGCTCGGAAGG56500.11069580049521187No Hit
GGGTGGAGCTGAGGGTGGAAGGGGAGTGAGCTGACGCTCGGAAGGTGTCT52290.10244749394503767No Hit
GTCAGCCTTGGGCAAGTTCACATCCACTTCTGGGCCCTCTCCTTTGAAGC52040.1019576895180677No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA51940.10176176774727973No Hit
GCCTTGGGCAAGTTCACATCCACTTCTGGGCCCTCTGCTTTGAAGCCAGG51830.10154625379941294No Hit
GTCAAGAGAAAAGCCAACATGTTTTTCCTCCAATGCATAAAAGGAACTTC51280.10046868406007903No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)