FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001879250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001879250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4381335
Sequences flagged as poor quality0
Sequence length126
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCACGTCAAGAGCCAAGCCAAGGTACTGTTCCTCCAATGAGTAAACAG276400.6308579462652365No Hit
GTCAAGAGCCAAGCCAAGGTACTGTTCCTCCAATGAGTAAACAGCACTGC150690.3439362660011161No Hit
GGCACTTCTGTAGGGCTGGCATGAGTCAGTCAGTTCAAGACAACCTGAAG136030.31047614482800334No Hit
CTCCAATACATAAAAGGCACTTCTGTAGGGCTGGCATGAGTCAGTCAGTT129470.2955035394463103No Hit
GGGTGATCTTGTTGAAGGTTGGGTGATCCTGATCATGGTGGGATGTATCT126990.2898431642410361No Hit
GTCAAGAGAAAAGCCAACATGTTTTTCCTCCAATGCATAAAAGGAACTTC123290.28139824962026416No Hit
CTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTCCCCTTCTTTTCAATTT119400.27251967722166875No Hit
GGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCGGCC114600.26156411230823484No Hit
CCCACGTCAAGAGAAAAGCCAACATGTTTTTCCTCCAATGCATAAAAGGA100270.22885718622292064No Hit
GTCCTTTTTAATTCTGTCCACGTCAAGAGCCAAGCCAAGGTACTGTTCCT94790.21634958294675025No Hit
GCCCGCTCTGTTTTCCCTGAACCAGGAGTCTCCAGATGTCAACACAGAAG92820.21185323651352841No Hit
GCCAACATGTTTTTCCTCCAATGCATAAAAGGAACTTCCATAGGGCTGGC68130.1555005494900527No Hit
CACGTCAAGAGCCAAGCCAAGGTACTGTTCCTCCAATGAGTAAACAGCAC66050.15075313802756465No Hit
GGGGCATGATGGGTCTTGGTCTTCTTCCACTTCTTGGTACTTTTCAATTT65570.14965758153622127No Hit
GTCTTGGTCTTCTTCCACTTCTTGGTACTTTTCAATTTCATCCATGTCAA65050.14847072867059927No Hit
GCTGGCAGGAGTCAGGCTGTTCAAGACAACTGGAAGGAGTTGAATAACAT62290.14217127884537475No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA61440.14023123089195416No Hit
GGGTGATCCTGATCATGGTGGGATGTATCTGTCTTCTGGGCAGCATCTCC60240.1374923396635957No Hit
GGGAGGAAGAAATGGAAACCTAAATATCTACTGCAATGAAAACCAACAGC57950.1322656222361449No Hit
GTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGG56710.12943543463350782No Hit
CTCCAATGCATAAAAGGAACTTCCATAGGGCTGGCAGGAGTCAGGCTGTT55430.1265139506565921No Hit
GTACTTTTCAATTTCATCCATGTCAACAGCCAAGCCAACATGCTGTTGCT54950.12541839416524872No Hit
GTCTTCTTCCACTTCTTGGTACTTTTCAATTTCATCCATGTCAACAGCCA54820.1251216809488432No Hit
GGCAGGAGTCAGGCTGTTCAAGACAACTGGAAGGAGTTGAATAACATCTA54800.1250760327617039No Hit
GCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG53880.12297621615329575No Hit
GTGGGTTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTCTTCTTTCCTTC52360.11950695393070834No Hit
GTCCTGCAAGACTTCAGGCTCTTTCTCATCCAGCAGCTCCCTGCTGAGCC52100.11891352749789733No Hit
GTCTGGTCCACCTACAGTAGGTTAGTAAATGATAAGGGGAGGAAGAAATG50690.11569533030457611No Hit
GGCATGATGGGTCTTGGTCTTCTTCCACTTCTTGGTACTTTTCAATTTCA49890.11386940281900379No Hit
GCTTGGTTGAAAAGATGTAATCGATAATGTCAGCCCGCTCTGTTTTCCCT49560.11311620773120522No Hit
GGGGCATGGTGGGCCTTGGTCTTCTTCCTCTTCTTGGTCCTTTTTAATTC49140.11215759580127975No Hit
GTTCGATTAGTCTTTCGCCCCTATACCCAGGTCGGACGACCGATTTGCAC47110.10752430480663999No Hit
GGCTGGCCTAAGTCAGGCAGTTCAAGATAACCTGAAGGAGTCGAATAACA46880.10699935065453794No Hit
GCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTCAT46750.10670263743813244No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA46430.10597226644390352No Hit
GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAG45650.1041919871454705No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)