FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001879256

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001879256
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5119695
Sequences flagged as poor quality0
Sequence length126
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGGAGAAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACA123720.2416550204650863No Hit
GTCCACGTCAAGAGCCAAGCCAAGGTACTGTTCCTCCAATGAGTAAACAG104750.20460203195698182No Hit
GTCCTTTTTAATTCTGTCCACGTCAAGAGCCAAGCCAAGGTACTGTTCCT88780.17340876751447107No Hit
CCCACGTCAAGAGAAAAGCCAACATGTTTTTCCTCCAATGCATAAAAGGA83130.16237295385760284No Hit
GCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTTCAGAGAAACT71560.13977395137796295No Hit
CTTCTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTCCCCTTCTTTTCAA71380.13942236793402732No Hit
CCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTTCAGAGAAACTTCTC59860.11692102752214732No Hit
CTCCAATACATAAAAGGCACTTCTGTAGGGCTGGCATGAGTCAGTCAGTT58480.11422555445197419No Hit
CACGTCAAGAGCCAAGCCAAGGTACTGTTCCTCCAATGAGTAAACAGCAC56260.10988935864343483No Hit
GCTCAGGAGAAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTAC54400.10625632972276669No Hit
CTCGTCTTGCTGTGTCATGCCCGCCTCTTCACGGGCAGGTCAATTTCACT53990.10545550076713556No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)