FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001879311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001879311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5717062
Sequences flagged as poor quality0
Sequence length126
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTATTCGACTCCTTCAGGTTATCTTGAACTGCCTGACTTAGGCCAGCC90770.15877036141990414No Hit
GCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATATCA79000.13818286385559575No Hit
GTTATCTTGAACTGCCTGACTTAGGCCAGCCCTACAGCAGTGCTGTTTAC69510.12158342869117039No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)