FastQCFastQC Report
Tue 4 Apr 2023
EGAF00001879372

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001879372
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46757828
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAAACAGCTCCAACAGGATCAGGAGGGTAATAGACTTACTGTCATGGGA2250460.48130122725118885No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA469850.10048584805949498No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)