FastQCFastQC Report
Thu 9 Feb 2023
EGAF00001879377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001879377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101819291
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGTTCAAGGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGTG7966090.7823753162846124No Hit
GGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCC4979470.4890497616998728No Hit
GTTCAAGGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGTGGGG4775380.46900542648642096No Hit
CTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGTGGGGGGCTGCCTG4730130.464561278471287No Hit
GCTGGTTCAAGGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGT4083470.4010507203394296No Hit
CTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCC4064710.3992082404109453No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT3377560.33172102917118135No Hit
AGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCC3162590.3106081341697813No Hit
TGCTGGTTCAAGGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGG3101490.3046073066841528No Hit
AAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCCC2841870.2791091915971012No Hit
CGCTGGTTCAAGGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGG2323550.22820331758153767No Hit
CAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGA2254770.221448212598534No Hit
GCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCC2229320.21894868625632052No Hit
ATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTG2095520.20580775798173648No Hit
CAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGG2092020.20546401172642226No Hit
CTCGGTGCAGGAGGCGGCGGGTGGGGGGCTGCCTGCGGGCTGCGTCTAGT2047780.20111905905925037No Hit
CAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATG1770810.1739169446779982No Hit
AGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGAT1707900.16773835127176442No Hit
CAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCCT1700450.16700666281402413No Hit
GGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGTGGGGGGCTGC1692700.1662455103915426No Hit
GAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATG1576880.15487045573711566No Hit
CAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATG1430150.14045963058218505No Hit
GGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCT1265620.12430061018594207No Hit
GCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACC1254640.12322222907641342No Hit
CAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCC1243740.12215170502414911No Hit
CAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAAC1227780.1205842220999162No Hit
CTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACA1208680.11870834967805854No Hit
CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTG1203810.11823005131709274No Hit
CTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGT1182930.11617935937110387No Hit
CCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGCAC1145300.11248359606039683No Hit
CAAGGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGTGGGGGGC1096100.1076515058428368No Hit
CATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCT1088040.10685990732345603No Hit
CATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGT1080200.10608991571155214No Hit
GGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGC1067190.10481216177394126No Hit
TTCAAGGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGTGGGGG1051350.10325646443560485No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)