FastQCFastQC Report
Mon 6 Mar 2023
EGAF00001879416

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001879416
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84346860
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT1333670.15811732647783214No Hit
CAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGG906840.10751319017684832No Hit
CAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCCT900520.10676390324429386No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)