FastQCFastQC Report
Sun 5 Mar 2023
EGAF00001879418

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001879418
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72625181
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT1645170.22652886744612727No Hit
CAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGG977970.13465990535706893No Hit
CAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCCT925370.12741723838182242No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC796620.10968922748708881TruSeq Adapter, Index 6 (100% over 50bp)
GCGGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGC781390.10759215870319139No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)