FastQCFastQC Report
Sun 5 Mar 2023
EGAF00001879443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001879443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63541211
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCC1258140.19800378057006188No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT854630.13450011206113147No Hit
AGGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGC699510.11008760912661862No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)