FastQCFastQC Report
Sun 5 Mar 2023
EGAF00001879459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001879459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71836845
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTCACCTCCAGCTTTAGTTTTCCCATGACAGTAAGTCTATTACCCTC2562090.3566540262173262No Hit
ATGTGCTTAGTTCACATCTTCATAGTGCGCCTTTGTGTTTTCCTGGGTAT921690.12830324048891625No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)