FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001880115

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880115
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3316010
Sequences flagged as poor quality0
Sequence length250
%GC53

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACTGAGAGCC3200619.651991399302172No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGAGCC2583947.7923166697326005No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTAGCACGGTGAGCC2353537.097475580592338No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACCAGGAGCC2340917.059417794276857No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACGGTTAACC1683055.075527516503268No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACAGTGAGCC1219753.6783664705474353No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACTGTCAGCC852412.570589352866849No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCCAAGACAGAGAGCT562821.6972807681520863No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACTGTGAGTC428821.2931806598894453No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACGGTCAGCC366341.1047614452308647No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTGGTCAATATCTGA187600.5657401515676974No Hit
AGCGGCCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACTGAGAGCC47490.14321428463725985No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGTACGGTCAGCC47440.14306350101477378No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACGGTTACCC47030.14182707531038807No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACCCGGAGCC41530.12524087683692148No Hit
AGCGACCTCAGGTGGGAACACGTTTTTCAGGTCCTCCAGCACTGAGAGCC36110.10889593215943257No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACCGGGAGCC35650.10750872283256081No Hit
AGCGACCTCGCGTGGGAACACGTTTTTCAGGTCCTCCAGCACTGAGAGCC34290.10340740830093997No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTCCAGGCACTGTCC33830.10202019897406824No Hit
AGCGACCTCGAGTGGGAACACGTTTTTCAGGTCCTCCAGCACTGAGAGCC33350.10057267619820207No Hit
AGCGGCCTCGGGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGAGCC33250.10027110895322994No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)