FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001880118

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880118
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1723182
Sequences flagged as poor quality0
Sequence length250
%GC55

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACCAGGAGCC17303010.041307302420755No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTAGCACGGTGAGCC1538668.929178693835011No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTGGAAAGGGAAGAG1198236.9535893480781485No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACTGTCAGCC1007745.8481344396587245No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGAGCC907915.268799233046771No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGTACGGTCAGCC669193.8834551428694124No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTAGGATGGAGAGTC271561.5759217540573196No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACGGTTAACC169440.9832971792880846No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTGGAAAGGGAAGAG121710.7063096062981159No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTGTCACAGTGAGCC91680.5320389836941194No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTCCAGGCACTGTCC87070.5052861508534792No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTGGAAAGGGCAGAG83800.4863096295109861No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACTGAGAGCC54230.3147084869735176No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACTGTGAGTC50920.29549983692958726No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCCAAGACAGAGAGCT37830.21953571938425542No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTGGAAAGGGAAGCG37490.217562625422039No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTGGTGTGCCTGGCC33410.19388549787544207No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTCCAGGCACTGTCC32410.18808228033951144No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACCCGGAGCC30050.17438668695471518No Hit
AGCGACCTCGCGTGGGAACACGTTTTTCAGGTCCTCGAGCACCAGGAGCC23890.13863886693338254No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACCGGGAGCC22350.1297019119280494No Hit
AGCGACCTCGAGTGGGAACACGTTTTTCAGGTCCTCGAGCACCAGGAGCC22080.12813504319334812No Hit
AGCGACCTCAGGTGGGAACACGTTTTTCAGGTCCTCGAGCACCAGGAGCC21850.1268003031600841No Hit
AGCGACCTCGGGTGGGAACACCTTGTGTGCCTGGCCACAGGCTTCTTCCC20750.1204167638705604No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTGGAAAGGGAGCTT17340.10062779207303699No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)