FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001880123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3558811
Sequences flagged as poor quality0
Sequence length250
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGAGCC50801314.27479571126424No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACTGAGAGCC46754413.137646253200858No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGTACGGTCAGCC2195576.169391968272549No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTAGCACGGTGAGCC1616274.541601113405573No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACCAGGAGCC1510854.24537858290311No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACGGTTAACC1012302.844489353326153No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACAGTGAGCC499751.4042611422747653No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTAGGATGGAGAGTC453621.2746391983165164No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACGGTCAGCC445591.2520754825136822No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCCAAGACAGAGAGCT414841.1656702196323434No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACTGTCAGCC358651.007780407557468No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACTGTGAGTC65810.18492131220230576No Hit
AGCGACCTCGCGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGAGCC53020.1489823426981652No Hit
AGCGGCCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACTGAGAGCC52870.14856085361093915No Hit
AGCGACCTCAGGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGAGCC51410.14445835982860566No Hit
AGCGACCTCGAGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGAGCC49870.14013107186641832No Hit
AGCGGCCTCGGGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGAGCC46860.1316731908494157No Hit
AGCGACCTCAGGTGGGAACACGTTTTTCAGGTCCTCCAGCACTGAGAGCC46210.12984673813810288No Hit
AGCGACCTCGCGTGGGAACACGTTTTTCAGGTCCTCCAGCACTGAGAGCC46150.12967814250321244No Hit
AGCGACCTCGAGTGGGAACACGTTTTTCAGGTCCTCCAGCACTGAGAGCC43610.12254092729285146No Hit
AGCGACCTCGGGTGGAAACACGTTTTTCAGGTCCTCTGTGACCGTGAGCC41250.11590949898716173No Hit
AGCGACCTCGGGTGGAAACACGTTTTTCAGGTCCTCCAGCACTGAGAGCC39320.11048633939818664No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCAAGCACTGAGAGCC38690.10871608523183726No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTGGAAAGGGAAGAG38040.10688963252052441No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)