FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001880148

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880148
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1632587
Sequences flagged as poor quality0
Sequence length250
%GC53

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACAGTGACCAGGGTGCC1241617.605168974149616No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGATGACCCGCGTTCC757104.637425141814801No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC752534.609432759173019No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACAGTGACCAGGGTGCC601483.6842140725119092No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC391612.398708307734902No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGATGACCCGCGTTCC377502.3122810606724173No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC347392.12784984812448No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGACGCC288341.7661539630047283No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTAGCACGGTGAGCC286781.7565985763698964No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACTGTCAGCC262581.608367578573148No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGAGCC190481.1667372091043233No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC172831.0586265846781826No Hit
AAGACGGATGGGCCCTTGGTGGAAGCTGAGGAGACGGTGACCGTAGTCCC151820.9299351275000965No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGACGCC148790.9113756265362887No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGTACGGTCAGCC141400.866110044977695No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGCTTCC126200.7730062777665142No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAAGAGACGGTGACCACTGTCCC104320.6389858549651566No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGCGGAGACACTGACCGTGGTCCC100540.6158324181192182No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACGGTTAACC94550.5791421835406015No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTAGGATGGAGAGTC89790.5499860038086791No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACTGTGAGTC85650.5246274777393181No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGCTGACCCGCGTTCC78360.47997442096500825No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACCAGGAGCC75070.4598223555620619No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACCGTGACCAGGGTGCC70770.4334837898378463No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGCTTCC66380.406593951807775No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAAGAGACGGTGACCGTGGTCCC54530.334009764870111No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAAGAGACGGTGACCACTGTCCC53060.325005650541135No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGCGGAGACACTGACCGTGGTCCC52190.3196766849178635No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCCAAGACAGAGAGCT48400.2964619955934967No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTGTCACAGTGAGCC45910.281210128464823No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACTGAGAGCC41940.25689289452874486No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGCTGACCCGCGTTCC38810.23772086878065304No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTGCC33930.20782965930758973No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACCGTGACCAGGGTGCC33320.20409325812345683No Hit
AAGACCGATGGGCCCTTGGTGGAAGCTGAGGAGACGGTGACCGTAGTCCC32350.1981517677159012No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGCCCTTTGGCTTTGGAGATGGTT30950.18957642073592404No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAAGAGACGGTGACCGTGGTCCC28590.17512083582681964No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGGGGAGACGGTGACCAGGGTTCC26320.16121652322357094No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGCCGCC25640.15705135469043918No Hit
AAGACCGATGCGCCCTTGGTGGAGGCTGAGGAGACAGTGACCAGGGTGCC25370.15539753777287213No Hit
AAGACCGATAGGCCCTTGGTGGAGGCTGAGGAGACAGTGACCAGGGTGCC22890.14020692312262686No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGATGACCGTGGTCCC19210.11766601106097255No Hit
AAGACCGATGAGCCCTTGGTGGAGGCTGAGGAGACAGTGACCAGGGTGCC17170.10517050546157725No Hit
AAGACCGATGCGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC16540.10131159932058752No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)