FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001880168

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880168
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2434955
Sequences flagged as poor quality0
Sequence length250
%GC55

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC35090914.411313556102678No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC1720477.0657157935156905No Hit
AAGACCGATGGGCCCTTGGTGGAAGCTGCTGTCCTTGGTCCTGGCTGAGA797623.2757073539346724No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGATGACCAGGGTTCC681272.79787511473518No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACAGTGACCAGGGTGCC599232.460948970309513No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTGCC589952.4228373830317196No Hit
AAGACGGATGGGCCCTTGGTGGAAGCTGCTGTCCTTGGTCCTGGCTGAGA365771.5021632843317434No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGATGACCAGGGTTCC328191.3478277832649885No Hit
AAGACCGATGGGCCCTTGGTGGAAGCTGAGGAGACGGTGACCTGGATTCC319561.3123856498374713No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTGCC283481.1642104268867393No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACAGTGACCAGGGTGCC281141.1546003930257438No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC261731.0748863942044102No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGCTCC250371.028232554605732No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGCTGTCCTTGGTCCTGGCTGAGA230330.945931238975669No Hit
AAGACGGATGGGCCCTTGGTGGAAGCTGAGGAGACGGTGACCTGGATTCC148480.6097853964446982No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC127760.5246914214020382No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGCTCC119500.49076882324314No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGCTGTCCTTGGTCCTGGCTGAGA112410.4616512420147395No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGCTGACCAGGGTTCC71190.2923667993864363No Hit
AAGACCGATAGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC47570.19536295331946588No Hit
AAGACCGATGAGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC46240.1899008400565924No Hit
AAGACCGATGCGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC45480.1867796324778076No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACCGTGACCAGGGTGCC43710.17951050430090085No Hit
AAGAGCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC34520.14176853371006856No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGCTGACCAGGGTTCC33270.136634968613383No Hit
AAGACCGATCGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC27680.11367766550100515No Hit
AAGACCGATGGACCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC26740.1098172245482976No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTCCC26180.10751738738498248No Hit
AAGACCGATGGGCCCATGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC25850.10616212619945749No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGATTCC25430.10443724832697114No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)