FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001880172

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880172
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3872649
Sequences flagged as poor quality0
Sequence length250
%GC54

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC58181615.023721488831029No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC2840637.335108345734405No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACAATGACCGTGGTCCC1612974.165030189929426No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAAGAGACGGTGACCATTGTCCC1299313.3550936322914886No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACAATGACCGTGGTCCC805052.0788096210113545No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAAGAGACGGTGACCATTGTCCC647171.6711300197874892No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC570351.4727645082216334No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGATGGCCAGGGTTCC313130.808567985376418No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTAAAGAGACGGTGACCATTGTCCC296750.7662713558600327No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC286430.7396229299376216No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGAGTTCC216860.5599784540246224No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACAGTGACCAGGGTGCC180480.4660375882244944No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAAACGGTGACCGTGGTCCC180300.4655727900979407No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGATTCC160660.41485815006730536No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGATGGCCAGGGTTCC155470.4014564707516741No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTAAAGAGACGGTGACCATTGTCCC142010.3666998997327153No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTCCC139470.3601410817246799No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACACTGACCAGGGTGCC133750.3453708301475295No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACACTGACCGTGGTCCC124210.3207365294401842No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGAGTTCC106660.2754187121012No Hit
AAGACCGATGGGCCCTTGGTGGAGGTTGAGGAGACGGTGACCGTGGTCCC102340.2642635570639115No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGGGGTTCC91120.23529114050873187No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAAACGGTGACCGTGGTCCC89590.23134035643302556No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACAGTGACCAGGGTGCC88640.22888725520954778No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGACGAGACGGTGACCAGGGTTCC84330.21775792229040122No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGATTCC81650.2108375946283797No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGATGACCGGGGTTCC78900.20373651213936506No Hit
AAGACCGATGCGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC73350.18940523657062647No Hit
AAGACCGATAGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC73270.18919865962549148No Hit
AAGACCGATGAGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC70760.18271730797188176No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTCCC68780.17760452857979125No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACACTGACCAGGGTGCC67410.17406689839435488No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGCGGAGACGGTGACCAGGGTTCC64180.16572635423453042No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACACTGACCGTGGTCCC62790.16213707981281028No Hit
AAGACCGATGGGCCCTTGGTGGAAGCTGAGGAGACGGTGACCAGGGTTCC61420.1585994496273739No Hit
AAGAGCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC57460.14837389084319286No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTACAGAGACGGTGACCTTTGTCCC54740.14135027470860384No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGCGACGGTGACCATCGTCCC54580.1409371208183339No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACCATGACCGTGGTCCC54080.13964601491124035No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACCCTGACCGTGGTCCC51920.13406843739259613No Hit
AAGACGGATGGGCCCTTGGTGGAAGCTGAGGAGACGGAGACCAGGGTTCC51840.13386186044746115No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGCGCC51260.1323641775952326No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAAGAGACTGTGACCAGGGAACC50560.13055662932530163No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAAGAGACAGCGACCAGGGTGCC46680.12053764748625553No Hit
AAGACGGATGGGCCCTTGGTGGAGGTTGAGGAGACGGTGACCGTGGTCCC46620.1203827147774043No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGGGGTTCC45050.11632864222913049No Hit
AAGACCGATCGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC42580.10995057904808828No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGAGCAGGGTTCC42010.1084787183140016No Hit
AAGACCGATGGACCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC41340.10674863639849623No Hit
AAGACCGATGGGCCCTTGGTGGAGACTGAGGAGACGGTGACCAGGGTTCC39960.10318518409491798No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGACGAGACGGTGACCAGGGTTCC39810.1027978523227899No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)