FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001880173

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880173
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2047964
Sequences flagged as poor quality0
Sequence length250
%GC61

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGACCGATGGGCCCTTGGTGGAGGCTGCAAGAGAGGTGGTGCCATGTGA1511187.378938301649833No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC1183665.779691439888592No Hit
AAGACCGATGGGCCCTTGGTGGAAGCTGCAAGAGAGATGGCGCCATGTGA802203.9170610420886307No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGCAAGAGAGGTGGTGCCATGTGA780193.809588449796969No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGTGGCTGCTCGGTCCTGGTACCC737453.600893375078859No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC634313.097271241096035No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGCTGTCCTTGGTCCTGGCTGAGA475912.3238201452759912No Hit
AAGACGGATGGGCCCTTGGTGGAAGCTGCAAGAGAGATGGCGCCATGTGA391331.910824604338748No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGTGGCTGCTCGGTCCTGGTACCC382051.8655113078159578No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGCACCACAGGCTCTGGCTGACTC259741.2682840128049127No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGCTGTCCTTGGTCCTGGCTGAGA257791.2587623610571281No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGCACCACAGGCTCTGGCTGACTC142760.6970825659044788No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGCGGCGGCTCTGCCCTGGTCCCC121900.5952253066948443No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGCGGCGGCTCTGCCCTGGTCCCC91120.444929696029813No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGCACGAGAGGTGGTGCCATGTGA60690.29634309978105083No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGCAAGAGAGGTGGGGCCATGTGA56050.27368645151965565No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTATGTGCCCCTCCTGGATGAGCTC52630.25698693922354104No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTATGTGCCCCTCCTGGATGAGCTC38270.18686851917318859No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTTCTGATGCTCTCCCCTGTTTCCT37140.18135084405780572No Hit
AAGACCGATGGGCCCTTGGTGGAAGCTGCAAGAGAGCTGGCGCCATGTGA34930.1705596387436498No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGCAAGAGAGGTGGTTCCATGTGA33580.1639677259951835No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGTGGCTGCTTGGTCCTGGTACCC31810.15532499594719437No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGCACGAGAGGTGGTGCCATGTGA30110.14702406878245908No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGGGGCTGCTCGGTCCTGGTACCC28820.14072512993392464No Hit
AAGACCGATGGGCCCTTGGTGGAAGCTGCACGAGAGATGGCGCCATGTGA28130.13735593008470853No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGCACACCTTCCCGGCTGTCCTAC27900.13623286346830316No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGCAAGAGAGGTGGGGCCATGTGA27870.13608637651833724No Hit
AAGACCGATGGGCCCTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGA23650.11548054555646486No Hit
AAGACCGATGGGCCCTTGGTGGAAGCTGCACCACAGGCTCTGGCTGACTC23390.11421099199009357No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)