FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001880177

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880177
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4490727
Sequences flagged as poor quality0
Sequence length250
%GC53

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC4264529.49627977830761No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC2235594.97823626330436No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAAGAGACGGTGACCATTGTCCC1058802.35774742040654No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACAGTGACCAGGGTGCC1008752.2462955329949916No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGCGACCAGGGTTCC877201.9533585541940093No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC720381.6041500630076155No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACAAGGGTTCC680511.5153671109377167No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAAGAGACGGTGACCATTGTCCC547951.2201810530900676No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACAGTGACCAGGGTGCC472621.0524353851837354No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGCGACCAGGGTTCC468471.0431941197939665No Hit
AAGACCGATGGGCCCTTGGTGGAAGCTGAGGAGACGGTGACCAGGGTTCC442180.9846512602525158No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGGGGTGCC402330.895912844401363No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC386210.860016652092189No Hit
AAGACCGATGGGCCCTTGGTGGAGGCCGAGGAGACGGTGACCAGGGTTCC378810.843538251156216No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACAAGGGTTCC362770.8078202037220255No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAAGAGACGGTGACCAGGGTTCC359890.8014069882226197No Hit
AAGACCGATGGGCCCTTGGTGGAAGCTGCGGAGACGCTGACCCGGGTTCC356600.7940807802389235No Hit
AAGACCGATGGGCCCTTGGTGGAGGCAGAGGAGACGGTGACCAGAGTTCC313620.6983724461540415No Hit
AAGACCGATGGGCCCTTGGTGGAAGCTGAAGAGACGGTGACCATTGTCCC307450.6846330226709395No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACAGTGACCAGGGTTCC266220.5928216077263214No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGATGACCGTGGTCCC266000.5923317093201167No Hit
AAGACCGATGGGCCCTTGGTGGAAGCTGCGGAGACGGTGACCAGGGTTCC240680.535948856387841No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCACGGTTCC232260.5171991082958283No Hit
AAGACGGATGGGCCCTTGGTGGAAGCTGAGGAGACGGTGACCAGGGTTCC225730.5026580328753005No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGGGGTGCC210920.4696789628939813No Hit
AAGACCGATGGGCCCTTGGTGGAGGTTGAGGAGACGGTGACCGTGGCCCC209760.4670958622067206No Hit
AAGACCGATGGGCCCTTGGTGGAGGCAGAGGAGACGATGACCGTGGTCCC208390.46404513122262836No Hit
AAGACGGATGGGCCCTTGGTGGAGGCCGAGGAGACGGTGACCAGGGTTCC203940.45413582255167145No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAAGAGACGGTGACCAGGGTTCC192570.4288169821946425No Hit
AAGACCGATGGGCCCTTGGTGGAAGCTGCAGAGACGGTGACCATCGTCCC185070.4121159001649399No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAAGAGACGACGACCATTGTCCC183380.4083525896809136No Hit
AAGACGGATGGGCCCTTGGTGGAAGCTGCGGAGACGCTGACCCGGGTTCC183290.4081521766965571No Hit
AAGACGGATGGGCCCTTGGTGGAGGCAGAGGAGACGGTGACCAGAGTTCC168800.3758856862151719No Hit
AAGACCGATGGGCCCTTGGTGGAGGTTGAAGAGACGGTGACCAGTGTCCC164760.3668893700285054No Hit
AAGACGGATGGGCCCTTGGTGGAAGCTGAAGAGACGGTGACCATTGTCCC157050.3497206577019712No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACAGTGACCAGGGTTCC141760.31567271847075096No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGATGACCGTGGTCCC140880.3137131248459325No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGCGGAGACGGAGACCAGGGTTCC138810.3091036262057346No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGCGACCGTGGTCCC136980.3050285621904872No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCACGGTTCC131170.29209079064481097No Hit
AAGACGGATGGGCCCTTGGTGGAAGCTGCGGAGACGGTGACCAGGGTTCC121620.27082474619365643No Hit
AAGACGGATGGGCCCTTGGTGGAGGCAGAGGAGACGATGACCGTGGTCCC111490.2482671513988715No Hit
AAGACGGATGGGCCCTTGGTGGAGGTTGAGGAGACGGTGACCGTGGCCCC105950.23593061880626456No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAAGAGACGACGACCATTGTCCC99350.2212336666201263No Hit
AAGACGGATGGGCCCTTGGTGGAAGCTGCAGAGACGGTGACCATCGTCCC96670.2152658133081793No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGGAGAGACCGTGACCATTGTCCC83820.1866512927639556No Hit
AAGACGGATGGGCCCTTGGTGGAGGTTGAAGAGACGGTGACCAGTGTCCC80400.17903559935841123No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGCGACCGTGGTCCC75500.16812422576567224No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGCGGAGACGGAGACCAGGGTTCC74570.16605329159398913No Hit
AAGACCGATGGGCCCTTGGTGGAGGCCGAGGAGACGGTGACCAGAGTTCC69620.15503057745438545No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACCGTGACCAGGGTGCC57370.12775214347253797No Hit
AAGACCGATAGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC56930.12677234666012874No Hit
AAGACCGATGAGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC55290.12312037672296712No Hit
AAGACCGATGCGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC53980.12020325439511242No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGATGAGACCGTGACCAGGGTCCC47840.10653063524012926No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)