FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001880183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2154498
Sequences flagged as poor quality0
Sequence length250
%GC55

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC42063019.523341400177674No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC2047719.504348576791438No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAAGAGACGGGGACCATTGTCCC577522.680531613396717No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTAAGGAGACGGTGACCAGGGTTCC545202.530519870522043No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAAGAGACGGGGACCATTGTCCC288221.3377594223805267No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTAAGGAGACGGTGACCAGGGTTCC264051.225575516895351No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC216561.0051529404993647No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC106540.49450034300333534No Hit
AAGACCGATGGGCCCTTGGTGGAAGCTGAGGAGACGGTGACCAGGCTTCC95920.4452081180859764No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACTAGGGTTCC93460.43379014508252034No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAAGAGACGGTGACCATTGTCCC75390.3499190994839633No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGACACGGTGACCGTGGTCCC75240.34922288161789894No Hit
AAGACCGATGGGCCCTTGGTGGAAGCTGAGGAGACGGTGACCAGGGTTCC57220.26558390864136333No Hit
AAGACCGATAGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC55120.2558368585164618No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTGCC54620.2535161322962472No Hit
AAGACCGATGCGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC52910.24557924862311314No Hit
AAGACCGATGAGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC50660.23513598063214727No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACTAGGGTTCC47160.2188908970906448No Hit
AAGACGGATGGGCCCTTGGTGGAAGCTGAGGAGACGGTGACCAGGCTTCC45760.21239286367404378No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGCTCC44790.20789065480682742No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTCAGGAGACGGTGACCAGGGTTCC41740.1937342248635181No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGATTCC38660.1794385513469959No Hit
AAGAGCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC37790.17540048772382244No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGACACGGTGACCGTGGTCCC37000.1717337402958833No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAAGAGACGGTGACCATTGTCCC36640.17006281741732876No Hit
AAGACCGATGGGCCCTTGGTGGAAGCTGAGGAGACGGTGACCGTGGTCCC36420.16904169788043433No Hit
AAGACCGATGGGCCCATGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC33220.15418905007106065No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACTCGGGTTCC33020.15326075958297478No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGGGACCAGGGTTCC32130.14912986691099273No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTCCC31000.14388502565330766No Hit
AAGACCGATCGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC30970.14374578208009475No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGATCC30910.143467294933669No Hit
AAGACCGATGGACCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC30530.1417035430063059No Hit
AAGACCGATGGGCCCTTGGTGGAGACTGAGGAGACGGTGACCAGGGTTCC29470.13678360341945084No Hit
AAGACGGATGGGCCCTTGGTGGAAGCTGAGGAGACGGTGACCAGGGTTCC28310.1313995185885529No Hit
AAGACCGATGGGCCCTTGGTGGAGGATGAGGAGACGGTGACCAGGGTTCC27300.1267116516237193No Hit
AAGACGGATAGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC26690.12388036563505744No Hit
AAGACGGATGAGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC26040.12086342154877842No Hit
AAGACGGATGCGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC25940.1203992763047355No Hit
AAGATCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC25750.11951740034105392No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTGCC25530.1184962808041595No Hit
AAGACCGATGGGCCCTTGGTGGAAGCTGAGGAGACGGTGACCTGGGTTCC24960.11585065291311479No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAAGAGACGGTGACCTTTGTCCC23620.10963110664293955No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAAACGGTGACCGTGGTCCC23210.10772811114236355No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGCTCC23040.10693906422749057No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCCGGGTTCC22880.10619643183702189No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGAGCAGGGTTCC22750.1055930430197661No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACAGTGACCAGAATTCC22440.10415419276323301No Hit
AAGACCGATGGGACCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC22320.1035972184703815No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTAGCACGGTGAGCC22300.1035043894215729No Hit
AAGACCGATGGGCCCCTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC22010.10215836821384844No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGATGACCAGGGTTCC21710.10076593248171963No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)