FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001880186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2924615
Sequences flagged as poor quality0
Sequence length250
%GC53

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC40859313.970830348609988No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC2077017.101823658840566No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC1748625.978975010385983No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC891843.049427018599029No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGCTGACCAGGGTTCC633622.166507386442318No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGCTGACCAGGGTTCC318221.0880748406200473No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGAATTCC258110.8825435142745284No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGCGACCAAGGTCCC254780.8711574002048132No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGCTTATGAGGGTTCC251170.8588138951622692No Hit
AAGACCGATGGGCCCTTGGTGGAGGCCGAGGAGACGGTGACCTGGGTTCC182700.6246976097708588No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGATGACCGTGGTCCC145910.4989032744480897No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGAATTCC132640.45352978084294854No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGCTTATGAGGGTTCC127540.43609158812356497No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGCGACCAAGGTCCC123860.4235087353378137No Hit
AAGACGGATGGGCCCTTGGTGGAGGCCGAGGAGACGGTGACCTGGGTTCC91600.3132036182540266No Hit
AAGACGGATGGGCCCTTGGTGGAAGCTGAGGAGACGGTGACCAGGGTTCC88230.3016807340453359No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGATGACCGTGGTCCC80370.27480540173663887No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGCTCC75270.25736720901725524No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGCAGAGACGGTGACCACTGTTCC70100.23968966855466445No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGCGACCAGGGTCCC65920.2253971890317187No Hit
AAGACCGATGGGCCCTTGGTGGAAGCTGAGGAGACGGTGACCAGGGTTCC60760.20775384110387182No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGTGTTCC58500.2000263282517528No Hit
AAGACCGATAGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC50880.17397161677690912No Hit
AAGACCGATGCGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC50670.1732535735472874No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGCTGTCCTTGGTCCTGGCTGAGA49650.1697659350034107No Hit
AAGACCGATGAGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC48300.16514994281298565No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGATCC41660.1424460997430431No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGCTTCC41310.14124936102700697No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTACC39880.1363598285586308No Hit
AAGACCGATGGGCCCTTGGTGGAGGCCGAGGAGACGGTGACCAGGGTTCC38910.13304315268847353No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGCTCC38790.13263284227154687No Hit
AAGAGCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC38680.13225672438936406No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGGTGCAACTTAGCCCAGCTCAGC37560.12842716049804845No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAAGAGACGGTGACCATTGTCCC37090.12682011136508567No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAAGTGACGATGACCTTTGTCCC36710.12552079504481786No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGGAGAGACGGTGACCAGGGTTCC36330.12422147872455007No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGACGACCAGGGATCC36150.12360601309916006No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGCAGAGACGGTGACCACTGTTCC35980.12302474000851393No Hit
AAGACCGATGGGCCCTTGGTGGAGGCGGAGGAGACGATGACCAGGGTTCC33770.11546818983011438No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTCCC33440.11433983618356605No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGACACAGTGACCAGGGTGCC32510.11115993045238431No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGCGACCAGGGTCCC32500.11112573791764045No Hit
AAGACCGATGGGCCCTTGGTGGAGGCAGCAGAGACGGTGACCACTGTTCC32000.10941611118044597No Hit
AAGACCGATGGGCCCATGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC31780.10866387541608041No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGGGGTCCC30830.10541558461541092No Hit
AAGACCGATCGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC29970.10247502662743643No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGATCGTGGTCCC29860.10209890874525365No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)