FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001880225

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880225
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1650258
Sequences flagged as poor quality0
Sequence length251
%GC56

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGCAGTGGTATCAACGCAGAGTACGGGGATGCTTTCTGAGAGTCATGG318161.927940964382539Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTCACCATTACCGCGGACGAGTCCACGA254551.542486083994139Clontech Universal Primer Mix Long (100% over 21bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTTTCTGAGAGTCATGGAT224521.3605145377268282Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGGGAGAGGAGCCCA210281.2742249999697017Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACTCTGAGAGGGGCTGTGCT196811.1926013992963524Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATCACATAACAACCACATTC154250.9347023313930306Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGAGAGAGGAGCCTT151960.9208257133127062Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGAGAGAGGAGCCCA145130.8794382454137474Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATGTTCACAGAGGGCCTGGT132360.8020564057256503Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGGGAGAAGAGCCCC119100.7217053333478765Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAGGGGCTGTGCTGAGAG110400.6689863039597445Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACCCAAAAACCACACCCCTC110380.6688651107887373Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCATCACATAACAACCACAT109920.6660776678555717Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGTGCTGAGAGGCGCTGCTGG85020.5151921699516075Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGGCAGTGGTCACAACTCT81070.4912565186776855Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGCTTTCTGAGAGTCATGGATC72800.4411431424662083Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGGAGAGGAGCCCAGCACTA72160.43726496099397794Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAGGCCCCATCTCAGACCC66870.4052093672625735Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATGCTCACAGAGGGCCTGGT62530.37891044915401106Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGAGAGGGGTGGGTACTGGA54080.327706334403469Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCTCTCAGAGAGGTGCCTT53520.3243129256152674Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAGAAGGTGGTGTGAGGCC51640.3129207675405906Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGCACAGACACAGTGCTGC49860.30213457532094984Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAGATGAGATCCTGGCCT49070.2973474450661654Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGAGCTCTGGGAGAGGAGCCCAG46610.2824406850322798Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGATGCTTTCTGAGAGTCATGGA46520.2818953157627474Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGACTCCTGGTTCTGGGTGC46220.28007741819763937Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACGTGGTCGGGGTAGAAGCC45650.2766234128239342Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACGTGGTCGGGGAAGAAGCC45290.2744419357458046Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAGATGAGATCCTGGCCTG44410.2691094362214878Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAGAGGAGCCTTAGTCCT41710.25274835813551577Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGTCACCACGCTGCTGAGGGA39480.23923531956821295Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGAGACACAGTGCTGCCTGCCCC39000.23632668346404018Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGCATCACATAACAACCACATT38660.23426639955691775Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAGAGGAGCCTTAGCCCT38360.23244850199180978Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTCTGGGAGAGGAGCCCAG37330.22620705368493899Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGATCACATAACAACCACATTCC36750.22269245172573016Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAGAGGAGCCCAGCCCTG36500.22117753708814017Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTGTTGCTCACAGTGACCC36310.22002620196357175Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGCATCACCCAGCAACCAC35170.21311819121616135Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACAGACACAGTGCTGCCTGC35160.21305759463065774Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAAGGTGGTGTGAGGCCATC34870.21130029365105332Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACAGTGACACTGATCTGGTA34870.21130029365105332Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGGACAGTGCCTGGAGGTG34440.20869464047439854Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGAGCTCTGAGAGAGGAGCCTTA32890.19930216972134052Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGGTAAGCAGCTGCCCCAC32380.19621174386065693Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAACCACATTCCTCCTCTAAA31920.19342430092749133Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATACTTTCTGAGAGTCCTGG31820.19281833507245533Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGTTCACAGTGACACTGATCT31450.19057626140882214Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGACACAGTGCTGCCTGCCC31180.18894015360022492Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGTGCTTTCTGAGAGTCATGG31160.18881896042921772Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGTCTCAGAGAGGAGCCTT30850.18694046627860614Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGACCCAAAAACCACACCCCTCC30710.18609211408155574Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGAGCTCTGAGAGAGGAGCCCAG30440.18445600627295852Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGAGGACCAAGCCCTGAAT30360.18397123358892972Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACAGTGACCCTGATCTGGTA30280.18348646090490092Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACATAACAACCACATTCCTC29980.18166856333979292Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACGTGGTCGGGGTAGAAGCA29330.17772978528205893Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGAGGCAGTGGTCACAACTC29280.17742680235454092Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGGCGGAGGACTCCTGGTTC28540.17294265502727452Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGTCATCCCTCCTCGCTGGT28500.17270026868526014Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGAGGACCAAGCCCTGAGC27820.16857970087101531Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTCATGTTCACAGAGGGCC27220.1649439057407993Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATCCTGAGGACAGTGCCTGG26730.16197467305112292Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGCATCACATAACAACCAC25030.1516732535155109Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGAGCTCTGGGAGAAGAGCCCCA24310.14731029935925172Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGACTCCTGGTTCTGGGTGCT24240.1468861232607265Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGATCTCAGAGAGGAGCCTT24230.1468255266752229Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACGTGGTCGGGGAAGAAGCA24110.1460983676491797Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAAGACCTATTCTTTCTT23120.1400993056843233Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGTGCAGTGCTGCCTGCCC23120.1400993056843233Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATTCCTGTATGGGGTGGTAT23020.1394933398292873Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCCAGGATATGAACCATGAATA22620.1370694764091433Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCATCACATAACAACCACA22470.13616052762658928Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTGGGAGAGCGATGGGGCT22390.13567575494256048Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGATCTGGTAAAGCCCCCATC21610.13094922127327968Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAGGGGCTGTGCTGAGAGG21360.1294343066356897Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAACAACCACATTCCTCCTCT21180.1283435680966249Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGACCCGAGGCTAGCATGGG20980.1271316363865529Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGCATCATCCCTTTCTTGG20980.1271316363865529Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGTGCTTTCTGAGAGTCATG20750.12573791491997008Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAGGCGCTGCTGGGCGTC20430.12379882418385489Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGAGCAGTGACATCACAGG20240.12264748905928648Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGCTCACAGTGACCCTGATCTG20180.12228390954626489Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGAGGCATCATCCCTTTCTTGGG20090.12173854027673248Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGACTCTGAGAGGGGCTGTGCTG19780.11986004612612089Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGATCTCATGTGCAAGAAAA19470.11798155197550927Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGCTTTTCTCAGGGGAGAGGCC19320.11707260319295529Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGTTCTGAGAGAGGAGCCCA19280.11683021685094089Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTAGGGGCAGAAGTCAAGTCAGGCCCCA19280.11683021685094089Clontech SMARTer II A Oligonucleotide (95% over 22bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGTCACCACGCTGCTGAGGGAG18950.11483052952932207Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTCCTGCTCACAGTGATCC18880.11440635343079689Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACCCAACAACCACATCCCTC18620.11283084220770329Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGTCTGGGACAGCAGAGCG18200.11028578561655207Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAAGTCTCAGAATGACCCCC18090.10961922317601247Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTCACCATTACCGCGGACGAGTCTACGA18070.10949803000500527Clontech Universal Primer Mix Long (100% over 21bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGAGGACACGACTACCTTTTCTG17760.10761953585439368Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGAAGAGAGACAGAGAGGC17610.10671058707183967Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGACCCTGCCATGGGCACCAG17450.10574104170378207Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGTGATCCTGATCTGGTAAA17370.10525626901975327Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACTACAGAGACACCAGCCCC17210.10428672365169567Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGCAGTGGTCACAACTCTC17060.10337777486914167Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGAGAGAAGGTGGTGTGAGGCCA17000.10301419535612008Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGAGAGGAGCCCAGCACTAG16690.10113570120550847Clontech SMARTer II A Oligonucleotide (100% over 23bp)

[WARN]Adapter Content

Adapter graph