FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001880241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1637747
Sequences flagged as poor quality0
Sequence length251
%GC56

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGCAGTGGTATCAACGCAGAGTACGGGGACTCTGAGAGGGGCTGTGCT303721.8544988939073008Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAGGGGCTGTGCTGAGAG239071.4597492775135599Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGGGAGAGGAGCCCC158440.9674265927521162Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGGGAGAGGAGCCCA150870.921204557236252Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGAGAGAGGAGCCCA120100.7333245000601436Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGTCACCACGCTGCTGAGGGA112780.6886289518466527Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGTGCTGAGAGGCGCTGCTGG107400.6557789450995789Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGCCCCAGCCCTGGGATTC106340.6493066389375161Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAGGCCCCATCTCAGACCC95630.5839119229038429Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATCCTGAGGACAGTGCCTGG82870.5060000109907086Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACGTGGTCGGGGTAGAAGCC78800.48114879770807095Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTGAGAGGCGCTGCTGGGC76570.46753253097090086Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATGCTTTCTGAGAGTCATGG71030.43370557235030804Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAGAAGGTGGTGTGAGGCC70050.4277217421250047Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGACTCCTGGTTCTGGGTGC69130.4221042688522708Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGCATCACCCAGCAACCAC64770.39548233029888014Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTGGGAGAGCGATGGGGCT60490.36934886768224884Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGAGGACCAAGCCCTGAGC59640.36415881085417956Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATACTTTCTGAGAGTCCTGG59070.3606784198047684Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGGAGAGGAGCCCAGCACTA56860.3471842720517882Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATGCTCACAGAGGGCCTGGT55360.3380253482375483Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATCACACAACAGCCACATCC54670.3338122432829979Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACGTGGTCGGGGAAGAAGCC54110.3303929117256817Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTTTCTGAGAGTCATGGAT52560.32092869045096706Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGGCAGTGGTCACAACTCT48470.29595535818413954Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGACAACAGACTACGCTGCACCC48470.29595535818413954Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAGATGAGATCCTGGCCT47050.2872849103066591Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGACTCTGAGAGGGGCTGTGCTG46870.28618583944895026Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACCCAAAAACCACACCCCTC46530.28410981671772256Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCCCCAGCCCTGGGATTCC45850.27995777125526716Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACAGTGACACTGATCTGGTA45330.27678267766633063Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGTGCAGTGCTGCCTGCCC45190.2759278447770016Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGTCTCCCTCACTGCCCAG44310.2705546094726475Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACGTGGTCGGGGTAGAAGCA43590.26615832604181233Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAGGGGCTGTGCTGAGAGG43250.26408230331058463Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGTCACCACGCTGCTGAGGGAG43220.2638991248342998Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGCACAGACACAGTGCTGC43140.26341064889754034Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCGTCTGGGCGGAGGACTCC42440.25913648445089504Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTGTGCTGAGAGGCGCTGC42410.25895330597461025Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGACTCCTGGTTCTGGGTG40990.2502828580971298Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGATCTGGTAAAGCTCCCATC38700.23630023440739018Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAACTGGCAGACACCTGCC38670.23611705593110538Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGGACAGTGCCTGGAGGTG36170.22085218290737213Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTGTTGCTCACAGTGACCC34220.20894558194886026Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGGAGAGGAGCCCCAGCCTT33400.20393870359707572Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGAGCTCTGGGAGAGGAGCCCCA33110.20216797832632272Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGAGGACCAAGCCCTGAAT33040.20174056188165818Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGGTCCTGCTCACATGGGA32340.19746639743501285Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGAGCCCCAGCCCTGGGATT32090.19593991013263953Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATGTTCACAGAGGGCCTGGT31590.19288693552789288Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGAGCCCCAGCCCTGGGAT31390.19166574568599423Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCCCCAGCCCTGGGATTCCC31200.1905056153361905Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGAGCTCTGGGAGAGGAGCCCAG30090.18372801171365297Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGGCGCTGCTGGGCGTCTG29280.1787821928539634Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACATCCTGAGGACAGTGCCT28970.17688934859902047Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGTGCTGAGAGGCGCTGCTGGG27810.16980644751600826Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACAGTGACCCTGATCTGGTA27760.1695011500555336Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTCTGGGAGAGGAGCCCAG27740.16937903107134372Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACTTTCTGAGAGTCCTGGAC27370.16711982986383123Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGGCGTCTGGGCGGAGGACT26970.1646774501800339Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAGAGGAGCCCAGCCCTG26570.1622350704962366Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCTCTCAGAGAGGTGCCTT26400.16119705913062274Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGTCTCCTTCACCACCCAG25990.1586936199547305Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGACACAGTGCTGCCTGCCC25870.1579609060495913Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGGTAAGCAGCTGCCCCAC25400.15509110992112946Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACGTGGTCGGGGAAGAAGCA25370.15490793144484466Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGACACCTGCCTGATGCTGC25260.15423627703180037Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGAGCTCTGAGAGAGGAGCCCAG25070.15307614668199665Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGGACTCCTGGTTCTGGGT24900.15203813531638283Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGAGAGGGGTGGGTACTGGA24780.15130542141124362Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGTCATCCCTCCTCGCTGGT24230.14794714934602232Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAGGTAAGCAGCTGCCCCA24220.14788608985392737Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGAGACACCTGCCTGATGCTGCC24100.1471533759487882Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGTACCGCCTACAACCCGTCAC24050.14684807848831352Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAGGCGCTGCTGGGCGTC23920.1460543050910794Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACAACAGACTACGCTGCACC23750.1450162937254655Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGCTTTTCTCAGGGGAGAGGCC23540.14373404439147194Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACAGATACAGAAGACCCCTC23320.14239073556538343Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGATCTGGTAAAGCCCTCATC23220.1417801406444341Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGATACTTTCTGAGAGTCCTGGA22790.13915458248435197Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGGAGAGCGATGGGGCTCTC22400.1367732622926496Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGGGAGAGGCCATCACTTG22120.13506359651399147Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAGGGCGGGATGGGCAGA21980.1342087636246624Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGTCTCAGAGAGGAGCCTT21620.13201062190924484Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACCGCTTAAGGCAGATCTACTATTCA21480.13115578901991579Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGTGGATTGGGTACATCTC21080.12871340933611847Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGGAGAGGAGCCCCAGCCGT21050.12853023085983367Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACAGACACAGTGCTGCCTGC21050.12853023085983367Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAAGAGGTGGAGACGTTACA20910.12767539797050462Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGAGACGTTACAGAAACCAC20890.12755327898631474Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGGCGGAGGACTCCTGGTTC20520.12529407777880222Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGACAACAGACTACGCTGCACCCG20240.12358441200014408Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGACCAAGCCCTGAGCACA19980.12199686520567585Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGTCCAATTTCAGGTCATACTGCC19960.12187474622148597Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGCTGGGAGAGCGATGGGGCTC19540.11931024755349881Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACAGTGACCCTGATTGGGCA19430.11863859314045454Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGTGATGTTCTGGTACCGTCAGCA19410.11851647415626466Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAGATGAGATCCTGGCCTG18080.1103955617076386Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGATCACACAACAGCCACATCCC17880.10917437186573994Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTCTGGGAGAGGAGCCCCA17870.10911331237364501Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAAGGAAGCCCCCGGCCT17690.10801424151593622Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGCATGCTGATGGCAACTTCCAAT17620.10758682507127168Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGAGTTCTTCAAGAAACGGAGAT17160.10477808843490478Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTAGGTGGTGTGAGGCCATCACGGAAGA17030.10398431503767065Clontech SMARTer II A Oligonucleotide (95% over 22bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAAGGAAGCCCCCGGCCTG16910.10325160113253146Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGATTCACCATCTCCAGAGACAA16670.10178617332225308Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACGTGGTCGGGGTAGAAGCT16430.10032074551197469Clontech SMARTer II A Oligonucleotide (100% over 23bp)

[FAIL]Adapter Content

Adapter graph