FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001880257

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880257
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1266509
Sequences flagged as poor quality0
Sequence length251
%GC56

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGGGAGAGGAGCCCA555194.383624593271741Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGCATCACCCAGCAACCAC512084.0432401190990355Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGGAGAGGAGCCCAGCACTA200401.5823022181445217Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGAGCTCTGGGAGAGGAGCCCAG126721.0005455942279131Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACCCAAAAACCACACCCCTC116670.9211936117311444Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGGGAGAGGAGCCCC110720.8742140798051967Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTCTGGGAGAGGAGCCCAG96960.7655689774016607Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCATCACCCAGCAACCACA95390.7531726975489318Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGCACAAACTATGCACAGGACTTT93100.7350914995471804Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACGTGGTCGGGGAAGAAGCC91120.7194579746373694Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACCCAGCAACCACATCTGTC86160.6802952051663272Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACTCTGAGAGGGGCTGTGCT82780.6536076727445285Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACAAACTATGCACAGGACTT71270.5627279395566869Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACCCAACAACCACACCCCTC64820.5118005478050294Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCTCTCAGAGAGGTGCCTT60120.4746906654433565Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCAGAGCCTTGACCAGGGCA57090.45076663489955465Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATGCTCACAGAGGGCCTGGT56170.4435025728202484Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACGTGGTCGGGGTAGAAGCC50390.3978653132350422Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAGGCCCCATCTCAGACCC50340.3974705272524711Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAGGGGCTGTGCTGAGAG48660.3842057182380859Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGTCTCAGAGAGGAGCCTT48220.38073160159146124Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATACTTTCTGAGAGTCCTGG48040.3793103720542057Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGAGAGAGGAGCCCA43330.3421215324960186Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGCATCCCCCAGCAACCAC42970.3392790734215075Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGGCAGTGGTCACAACTCT42580.3361997427574538Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGCTCTGGGAGAGGAGCCCAGC38330.30264293423891975Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTCACCATGACCAGGGACACGTCCACGA37370.29506304337355677Clontech Universal Primer Mix Long (100% over 21bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGAGAGGAGCCCAGCACTAG37090.2928522418711592Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGCACAGACACAGTGCTGC36980.2919837127095031Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGGAGAGGAGCCCCAGCCTT36820.2907203975652759Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATGTTCACAGAGGGCCTGGT35900.2834563354859697Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGTGATCCTGATCTGGTAAA35150.2775345457474049Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGTCACCACGCTGCTGAGGGA34610.2732708571356382Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGATCTGGTAAAGCTCCCATC32600.25740046063628447Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGGGAGACGAGCCCA32300.25503174474085855Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTGGGAGAGCGATGGGGCT29880.23592410318442272Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGACCCAAAAACCACACCCCTCC29590.23363434448551096Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGTCATCCCTCCTCGCTGGT28180.2225013797770091Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATGGAAGTAATAAATACTAT28180.2225013797770091Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGCTGAGTCTGGGACAGCA27960.22076432145369673Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGCAGAGCCTTGACCAGGGCAG27720.21886934873735597Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGACTCCTGGTTCTGGGTGC27090.21389504535696152Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGAGAGGCCCCATCTCAGACCCG26980.21302651619530535Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACTTTCTGAGAGTCCTGGAC24710.1951032325865825Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACGTGGTCGGGGTAGAAGCA24670.1947874038005257Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACGTGGTCGGGGAAGAAGCG24580.19407678903189793Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGTGGGTGGCAGTTATATG24550.19383991744235532Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGAGCTCTGGGAGAGGAGCCCCA23390.1846808826467084Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTTTTGCTCACAGTGACCC23380.18460192545019422Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAGGTAAGCAGCTGCCCCA22780.17986449365934234Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGTGACTCCTGTGCCCCACC22770.17978553646282813Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAGCATCACCCAGCAACC22720.17939075048025716Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTGTTGCTCACAGTGACCC22470.1774168205674022Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGACACAGTGCTGCCTGCCC21680.1711792020427806Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAGCATCACCCAGCAACCA21270.1679419569856985Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGTGCTGGGAGAGCGATGGGG21130.16683655623449972Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATCACATAACAACCACATTC20670.16320452519484663Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGACCCAGCAACCACATCTGTCC20430.1613095524785059Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGTCTGGGAGAGGAGCCCAGCA19890.15704586386673922Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGTCAGAGAGGAGCCCAGC19520.1541244475957139Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCAGTTATATGGTATGATGGAA19490.15388757600617128Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGATCCTGCCATGGGCTTCAG19120.150966159735146Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGTATCAACAAGATCCAGGAAT19040.1503345021630324Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCATCACCCAGCAACCACAT18520.14622872794429412Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAGCCTGTTGAATTCTGGC18100.14291252569069782Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGTGACACAAACTATGCACAGGA17930.14157025334995646Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCAGTGGTCACAACTCTCCC17680.13959632343710152Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAAGAGGTGGAGACGTTACA17610.13904362306150214Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACGTGGTCGGGGTAGAAGCT17380.1372276075416756Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGTGTGAGCACAGATACGCAGTA17200.13580637800442003Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGATCTGGTAAAGCCCCCATC16980.1340693196811077Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGATTCACCATCTCCAGAGACAA16950.13383244809156508Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGAGGCAGTGGTCACAACTC16760.13233226135779533Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGACCCAACAACCACACCCCTCC16520.13043728864145457Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACTCTGCCATGGGCTGCAGG16440.12980563106934098Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGCACCAAATACAGTCCGTCCC16420.12964771667631259Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAGGCGCTGCTGGGCGTC16400.1294898022832842Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGATCCTGATCTGGTAAAGCT16340.12901605910419903Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGTCACCACGCTGCTGAGGGAG16080.1269631719948299Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAGATGAGATCCTGGCCT15820.12491028488546074Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGATGCAGTGCTTCCTGTCC15770.12451549890288975Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGATGGAAGTAATAAATACTATG15670.12372592693774777Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGTGCAGTGCTGCCTGCCC15640.12348905534820519Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAGATGAGATCCTGGCCTG15610.1232521837586626Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCATCACATAACAACCACAT15510.12246261179352062Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGCACCCAAAGTCCCACACACCTG15510.12246261179352062Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGATACTTTCTGAGAGTCCTGGA15420.12175199702489284Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGACGTGCTGCAGCAAGTGCC15410.12167303982837864Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGAGGGCCGGGGCAGATACG14930.11788309439569715Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCTGTAGCATCAGCTTTGT14930.11788309439569715Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGCACAGATACAGAAGACCCCT14910.11772518000266875Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAAGGAAGCCCCCGGCCT14870.11740935121661196Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGTCAACTAGAAAAATCAAGGCT14840.11717247962706938Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGCTTTTCTCAGGGGAGAGGCC14640.11559333569678543Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGCCAGGATATGAACCATGAATAC14540.11480376373164344Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACGTGGTCGGGGAAGAAGCA14510.11456689214210083Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATCCTGCCCTGACCCTGCCA14500.11448793494558665Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGATGTAGAGCTCAGGTGTGA14450.11409314896301564Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATCATCCAACAACCACATCC14140.11164547587107553Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGGAGACGAGCCCAGCACTG14050.11093486110244775Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATCACCCAGCAACCACATCT14050.11093486110244775Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGGCCGGCAGCAGGCTGACC14000.11054007511987676Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCAGAGCCTGTTGAATTCTG13910.10982946035124899Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTCCTGCTCACAGTGATCC13790.10888197399307861Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGCTTCCCCAGGAGGACCAAGC13590.10730283006279466Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGTGGATTGGGGAAATCTT13480.10643430090113849Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAGAAGGTGGTGTGAGGCC13470.10635534370462428Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCGGTGGGAAGGACCCGAG13410.10588160052553909Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGTGCCCTGAGAGCATCACCC13280.10485515697085453Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTCACAGTGACCCTGATCT12920.1020126978963434Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGTAAGCAGCTGCCCCACT12810.10114416873468725Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGAGCACTTGAAGATGCTGAGTCTT12760.10074938275211624Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGCAGAAGTCAAGTCAGGCCCC12670.10003876798348847Clontech SMARTer II A Oligonucleotide (100% over 23bp)

[WARN]Adapter Content

Adapter graph