FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001880272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1944933
Sequences flagged as poor quality0
Sequence length251
%GC55

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGCAGTGGTATCAACGCAGAGTACGGGGACTCTGAGAGGGGCTGTGCT169480.8713924849853439Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCATGCTGATGGCAACTTCCAA167970.8636287214006858Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACCCAAAAACCACACCCCTC133900.6884555920435306Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGAGAGAGGAGCCCA128630.6613595429765448Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAGCCTGCTGAATTCTGGC124640.6408446974780108Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATGCTCACAGAGGGCCTGGT123610.6355488852315221Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGGCAGTGGTCACAACTCT120310.6185817197816069Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAGGCCCCATCTCAGACCC120140.6177076536826719Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATGTTCACAGAGGGCCTGGT103270.53096944727659Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGCTTTTCTCAGGGGAGAGGCC101830.5235655932620815Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACGTGGTCGGGGAAGAAGCC94260.48464394403303357Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACGTGGTCGGGGTAGAAGCC94230.48448969707439793Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCAGAGCCTGCTGAATTCTG89730.461352653279059Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACGTGGTCGGGGTAGAAGCA82390.4236135640662172Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATCCTGAGGACAGTGCCTGG81850.4208371188107765Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAGAAGGTGGTGTGAGGCC79130.40685206122781603Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGTCACCACGCTGCTGAGGGA69300.35631047444822006Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGAGAGGGGTGGGTACTGGA63670.32736346187760706Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGCATCACCCAGCAACCAC62950.3236615348703529Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAGGGGCTGTGCTGAGAG58770.30216979196712684Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGGGAGAGGAGCCCA58320.29985608758759297Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGCATGCTGATGGCAACTTCCAAT54650.2809865429811721Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGCACAGACACAGTGCTGC51940.2670529010510902Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGAGAGAGGAGCCTT49740.25574145741781334Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGAGGACCAAGCCCTGAGC49400.25399332521994333Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGGGAGAGGCCATCACTTG49330.2536334156497936Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACAGACACAGTGCTGCCTGC48580.24977724168390378Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGTCTCAGAGAGGAGCCTT48170.247669199915884Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGACTCCTGGTTCTGGGTGC47100.24216772505788117Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAAGGAAGCCCCCGGCCT46800.24062525547152522Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGAGGCAGTGGTCACAACTC46260.23784881021608456Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATGCTTTCTGAGAGTCATGG45330.2330671544983812Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGCAGAGCCTGCTGAATTCTGG43210.2221670360881326Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGGGAGAGGAGCTCC43120.2217042952122258Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAGATGAGATCCTGGCCT42720.21964766909708458Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAGCTGGAAACACCTCCAT41120.2114211646365196Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGGACAGTGCCTGGAGGTG40530.20838764111668628Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGACCCAAAAACCACACCCCTCC39810.20468571410943204Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACGTGGTCGGGGAAGAAGCA39410.2026290879942908Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGCAGTGGTCACAACTCTC39130.20118944971369196Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACCCAACAACCACACCCCTC38520.19805309488810152Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACGTGGTCGGGGTAGAAGCG37480.19270586698873432Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGATCTGGTAAAGCTCCCATC36830.1893638495516298Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACAGATACAGAAGACCCCTC35750.18381095904074846Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGACAGTGCCTGGAGGTGA35710.18360529642923432Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGTGACTCCTGTGCCCCACC35360.18180574857848572Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTGGGAGAGCGATGGGGCT34640.1781038215712315Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGACTCTGAGAGGGGCTGTGCTG34200.17584153284457615Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGTGATCCTGATCTGGTAAA33650.1730136719362569Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACAGTGACCCTGATCTGGTA33650.1730136719362569Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGCAACATCTGGGTCATAACGCTA33150.1704428892923304Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGCACCAACAGTGGGAGCACCA31400.16144515003858745Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAGAGGAGCCTTAGCCCT30960.15918286131193207Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGTGAGAAGGAAGCCCCCGG30600.15733189780830498Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGCACCAATTACAGTCCCTTCT30510.1568691569323982Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGACAGACCCAGAGGACCCCTC30410.1563550004036129Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGACACAGTGCTGCCTGCCC29830.15337289253665806Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGTCATCCCTCCTCGCTGGT29210.15018512205818915Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATACTTTCTGAGAGTCCTGG28930.14874548377759028Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGAGAGGAGCCCAGCCCTG28360.145814791563514Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACGTGGTCGGGGTAGAAGCT27480.1412902141102033Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATGTAGAGCTCAGGTGTGAT27180.13974774452384736Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGATCACACAACAGCCACATCC26350.13548024533492928Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGACTCCTGGTTCTGGGTG26270.13506892011190103Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTTTCTGAGAGTCATGGAT26080.13409202270720894Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGAGCTCTGAGAGAGGAGCCCAG25690.13208681224494623Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGTCTCCCTCACTGCCCAG25390.1305443426585903Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGCTTGGAGAGGGGTGGGTA25050.12879621046072023Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTCCTGCTCACAGTGATCC24870.12787072870890667Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGTCAGAGGCCCCATCTCAG24680.12689383130421458Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGTTCCCGAAAAAGAGTCTCAT24540.12617401216391516Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGAGAGCCTGCTGAATTCTGGCT24430.12560843998225132Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAAGGGCCGATTCACCATCTC23780.1222664225451468Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGTCACCACGCTGCTGAGGGAG23710.12190651297499708Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGAGAGAAGGTGGTGTGAGGCCA23700.12185509732211856Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGAATGTGCATCCATGGGACAGCA23660.12164943471060442Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGCTTTTTCTCAGGGGAGAGGC23530.12098103122318352Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGACACATCCAACAACCAGTTCTCCCTGCAC23380.12020979643000557No Hit
CTGGCAGTGGTATCAACGCAGAGTACGGGGACAGTGACACTGATCTGGTA23330.11995271816561291Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGGAGAACCAAGCCCTGAAT23180.11918148337243493Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGTGCTGAGAGGCGCTGCTGGG22520.11578805028245188Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGAGATCCTGCCATGGGCTTC22310.11470832157200275Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGCACCAATTACAGTCCCTTCTT21350.10977241889566376Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGACCCTGCCATGGGCACCAG21350.10977241889566376Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGTCAGTTCCCGAAAAAGAGTCT20610.10596766058265246Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAAGGAAGCCCCCGGCCTG20360.1046822692606892Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGTGCTGAGAGGCGCTGCTGG20240.10406528142614681Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGGGAGAGCGATGGGGCTCTC19900.10231714922827675Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGAGAACTGGCAGACACCTGCC19800.10180299269949146Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGATCTGGTAAAGCCCCCATC19600.10077467964192083Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGACAGAATGTGACCCTGAGTTG19560.10056901703040672Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CTGGCAGTGGTATCAACGCAGAGTACGGGGGCTCATGCTCACAGAGGGCC19500.1002605231131355Clontech SMARTer II A Oligonucleotide (100% over 23bp)

[WARN]Adapter Content

Adapter graph