FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001880286

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880286
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1914303
Sequences flagged as poor quality0
Sequence length250
%GC53

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGTGGTATCAACGCAGAGTACGGGGGAACCCTGGTCACCGTCTCCTCA144220.7533812567811887Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGTCACCACGCTGCTGAGGGAGTAG141510.7392246681951603Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGACCCAAAAACCACACCCCTCCTT128600.6717849786580286Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGGCAGTGGTCACAACTCTCCC106270.5551367782425248Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGACTCTGAGAGGGGCTGTGCTGAG92060.48090610525084065Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGGGAGAGGAGCCCAGCA84040.439010961169679Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGAGAAGGTGGTGTGAGGCCATC72500.3787279234269601Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGCACAGACACAGTGCTGCCTG69650.36383999816121065Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGAGGCAGTGGTCACAACTCTCC65500.3421610894409088Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGCAGACTCCGTGAAGGGCCGGTTCACC63100.32962388921711977Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGAGAGAGGAGCCCAGCC62350.3257060141471857Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGAGAGGGGTGGGTACTGGAGAA60530.3161986373108123Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGCATCACCCAGCAACCACATC59700.311862855566752Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGACCCAAAAACCACACCCCTCCTTG57570.3007360903681392Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGATGCTTTCTGAGAGTCATGGATC56480.29504211193316837Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGGGAGAGGAGCCCCAGC55600.29044513851777903Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGAGGGGCTGTGCTGAGAGGCG54970.28715412345903446Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGCCCCAAGCTAGGAGATCCTGC52230.27284081987020864Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGCACAGATACAGAAGACCCCTCCG50620.2644304480534168Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGAGGCCCCATCTCAGACCCGAG50530.2639603030450247Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAACCCTGGTCACCGTCTCCTCAGC48880.2553409778911698Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGGAGAGGAGCCCAGCACTAGAA47140.24625150772892274Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGAGAAGGTGGTGTGAGGCCATCA46640.24363959101563337Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGATCTGGTAAAGCTCCCATCCTG44500.2324605874827548Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGAGGGGTGGGTACTGGAGAAG44170.23073672245198384Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGACAGTGACCCTGATCTGGTAAAG43710.2283337590757576Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGTGGTCACCGTCTCCTCAGCCTCCAC43620.22786361406736552Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGAGGACCAAGCCCTGAGCACA42690.22300544898064728Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGTCACCACGCTGCTGAGGGAGTA41810.21840847556525797Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAACCCTGGTCACCGTCTCCTCAG39620.20696828036105047Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGAGGGGCTGTGCTGAGAGGCGC39550.20660261202118999Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCTTTCTGAGAGTCATGGATCTC38880.20310264362538216Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCCAGGGAACCCTGGTCACCGTCTCC38340.20028177357502966Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCAGGGAACCCTGGTCACCGTCTCCT37930.1981400018701324Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCGGTCACCGTCTCCTCAGCCTCCAC37280.19474451014285615Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGAGGGAACCCTGGTCACCGTCTCCTC36040.1882669566938985Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGATGTTCACAGAGGGCCTGGTCTG35830.18716995167431696Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGATGCTCACAGAGGGCCTGGTCTA33430.17463275145052795Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAATGCACAGATACAGAAGACCCC33420.17458051311626216Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGAGATGAGATCCTGGCCTGGA33360.17426708311066744Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGACTCTGAGAGGGGCTGTGCTGAGA33190.17337903142814903Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGACTGTGTAGCAATCAGCCCCAGC32770.17118502138898595Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCTGTTGCTCACAGTGACCCTGA32040.16737162298758348Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGACAGATACAGAAGACCCCTCCGT32030.1673193846533177Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGCTTGGAGAGGGGTGGGTACTG31110.16251345790086524Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGCTTTTCTCAGGGGAGAGGCCATC30140.15744633947708384Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCTCCTGCTCACAGTGATCCTGA29520.154207562752605Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGAACCCTGGTCACCGTCTCCTC28860.150759832691063Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGACACAGCCATATACTACTGTACCAC28600.14940163600015252Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGAGATGAGATCCTGGCCTGGAC27940.14595390593861055Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGACAGATACAGAAGACCCCTCCGTC27770.14506585425609217Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGTCTACTCCCTCAGCAGCGTGGT27720.14480466258476324Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCTGGTCACCGTCTCCTCAGCCTCCA27450.14339422755958697Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGAGGGACCACGGTCACCGTCTCCTCA25910.1353495240826557Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGCTCTGGGAGAGGAGCCCAGCAC25860.13508833241132673Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGACACAGCCGTGTATTACTGTACTAG25850.13503609407706096Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGCTCTCAGAGAGGTGCCTTAGC25560.13352118238335312Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGACCAAGGGCCCATCGGTCTTGTCAG25350.13242417736377157Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGCACAGACACAGTGCTGCCTGC25210.13169284068405054Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGAGAACCAAGCCCTGAATCAG24760.1293421156420901Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCACAGATACAGAAGACCCCTCC24220.12652124559173755Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGTAGAGTCCTGAGGACTGTAG24210.1264690072574718Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGACACGGCTCACCGTGCTAGAGGAC24160.12620781558614283Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGACACAGTGCTGCCTGCCCCTTT24120.1259988622490797Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGACACCTGCCTGATGCTGCCAT24080.12578990891201655Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGACGTCTGGGGCCAAGGGACCACGGT23950.12511081056656131Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTCGGGAGTCTCCCAGACCCCCAGTAACAAG23770.12417052054977712Clontech Universal Primer Mix Long (100% over 21bp)
GCAGTGGTATCAACGCAGAGTACGGGAGGGAGTAGAGTCCTGAGGACTGT23680.12370037554138504Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGTGATCCTGATCTGGTAAAGCT23180.12108845882809564Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGCAGACTCCGTGAAGGGGCGGTTCACC22860.11941683213159045Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGACGGTCACCGTCTCCTCAGCCTCCA22540.11774520543508524Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCTCTGGGAGAGGAGCCCAGCAC22260.1162825320756432Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGATACTTTCTGAGAGTCCTGGACC22180.11586462540151689Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGCCCCAGCCCTGGGATTCCCA22030.11508105038753008Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCCCTGACCCTGCCATGGGCACC22020.11502881205326429Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAAGGGCCGATTCACCATCTCCAGA21980.11481985871620115Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGAGAGGAGCCCAGCCCTGGGA21870.11424523703927748Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGTCACCACGCTGCTGAGGGAGTAGA21720.11346166202529068Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGGAGACATCCTCTCTAGCCCCA21420.11189451199731704Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGCTTTCTGAGAGTCATGGATCTCA21330.11142436698892495Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGGGAACCCTGGTCACCGTCTCCT20910.10923035694976188Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGATCCTGCCATGGGCTTCAGG20860.10896916527843292Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCCACACTCATGATGCACTGTGT20760.10844678193577505Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGATCACACAACAGCCACATCCCTC20520.10719306191339616Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGGGAGAGGCCATCACTTGAAG20150.105260243545562Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGAGGCCCCATCTCAGACCCGAGG19960.10426771519451204Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGACACAGTGCTGCCTGCCCCTT19930.10411100019171468Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGGGACCACGGTCACCGTCTCCTC19730.10306623350639893Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGTGCAGTGCTGCCTGCCCCAC19520.1019692284868174Clontech SMARTer II A Oligonucleotide (100% over 23bp)

[FAIL]Adapter Content

Adapter graph