FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001880290

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880290
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1760197
Sequences flagged as poor quality0
Sequence length250
%GC53

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGTGGTATCAACGCAGAGTACGGGGACCCAACAACCACATCCCTCCTC277911.5788573665334051Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGACCCAACAACCACATCCCTCCTCA126750.7200898535788891Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGTCACCACGCTGCTGAGGGAGTAG110850.6297590553784604Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGGCAGTGGTCACAACTCTCCC110470.6276002061132929Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGATGTTCACAGAGGGCCTGGTCTG107410.6102157883464181Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGAGGACCAAGCCCTGAATCAG99220.5636869054997822Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGATGCTTTCTGAGAGTCATGGATC97630.5546538256797393Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGGGAGAGGAGCCCAGCA95610.5431778374806912Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAACCCTGGTCACCGTCTCCTCA95320.5415302946204317Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGCACAGACACAGTGCTGCCTG82700.46983377428776435Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGACACAGTGCTGCCTGCCCCTT77250.43887133087944136Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGACAGACACAGTGCTGCCTGCCCC74200.4215437249353339Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGCAGTGGTCACAACTCTCCCC70680.401545963321151Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGACCCAAAAACCACACCCCTCCTT68160.38722938398372453Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGGGAGAAGAGCCCCAGC67330.38251400269401664Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGAGGCCCCATCTCAGACCCGAG65770.3736513583422764Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCTTTCTGAGAGTCATGGATCTC61160.34746110804642893Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGATGCTCACAGAGGGCCTGGTCTA60560.34405239868037496Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGAGAAGGTGGTGTGAGGCCATC60120.3415526784786021Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGGGAGTAGAGTCCTGAGGACTGT57730.327974652837154Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGTGCAGTGCTGCCTGCCCCAC54780.3112151651207223Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGTCTACTCCCTCAGCAGCGTGGT51420.29212639267082036Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACAGTCTATATGGAACTGAGTAGCCTGAA51190.29081972074716633Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCAAGAAACATGTACTATTTTAACTA51180.2907629089243988Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGGAGAGGAGCCCAGCACTAGAA50470.2867292695079017Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGAAGTATGGTTCGGGGACTTATTATG49090.27888923796597764Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGACAGACACAGTGCTGCCTGCCCCT48720.27678720052357775Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGCCTTTTCTCAGGGGAGAGGCCAT47080.26747006158969705Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGAGAGGGGTGGGTACTGGAGAA46220.26258424483168646Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGATCACATAACAACCACATTCCTC45180.2566758152638597Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGCCAGCAGGGTTGCAATGTGGATTGTT45120.2563349443272543Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGAGGACCAAGCCCTGAGCACA44850.25480102511253Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAATCAGGTGCAGTGCTGCCTGC43310.246052004406325Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGTAGAGTCCTGAGGACTGTAG42980.24417721425499533Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGAGAGAGGAGCCCAGCC42660.24235923592643321Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGGGAACCCTGGTCACCGTCTCCT42510.24150705858491978Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAACCACATCCCTCCTCAGAACCC42030.23878009109207662Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGACACAGTGCTGCCTGCCCCTTTG37970.21571449104844514Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGAGAGAGAGACTTGTGGGGCCAGGGAA36730.20866982502526707Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGAGGGAACCCTGGTCACCGTCTCCTC35080.1992958742686188Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAACCCTGGTCACCGTCTCCTCAGC35010.19889819150924584Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGAGGCAGTGGTCACAACTCTCC34320.19497817573828383Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCAGGGAACCCTGGTCACCGTCTCCT34240.19452368115614332Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGTCACCACGCTGCTGAGGGAGTA33330.1893538052842949Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCTGAGGGAGTAGAGTCCTGAGGACT32550.1849224831084248Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCATCACATAACAACCACATTCC32350.18378624665307347Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAAGTACTCAGAGAGACTTGTGGGG31800.1806615964008574Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGAGGCCCCATCTCAGACCCGAGG30670.17424186042812254Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGACCCAAAAACCACACCCCTCCTTG29990.17037865647992811Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGAGAACCAAGCCCTGAATCAG29950.17015140918885785Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGATCCTGCCCTGACCCTGCCATGG29920.16998097372055515Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAACCCTGGTCACCGTCTCCTCAG29610.16821980721476062Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGCTTTCTGAGAGTCATGGATCTCA29490.16753806534154983Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCCGGCACGAGGTGACAGAGATGGGA28660.16282268405184191Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGATACTTTCTGAGAGTCCTGGACC28460.16168644759649062Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGCTCTGGGAGAGGAGCCCAGCAC28260.16055021114113932Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGAAGAAACATGTACTATTTTAACTAC27480.15611888896526924Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGACCAAGCCCTGAGCACAGAC27150.15424409881393958Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGATGGACGTCTGGGGCCAAGGGACC27100.15396003970010175Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCTCTGGGAGAGGAGCCCAGCAC26270.14924465841039383Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGACAGTGACCCTGATCTGGTAAAG26120.14839248106888037Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGATGCTTTCTGAGAGTCATGGATCT26020.1478243628412047Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAAGGTGGTGTGAGGCCATCACGG25680.1458927608671075Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGAACCCTGGTCACCGTCTCCTC25180.14305216972872922Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCCAGGGAACCCTGGTCACCGTCTCC24950.14174549780507523Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTCACCATTACCGCGGACGAGTCCACGAGCA24360.13839360026178887Clontech Universal Primer Mix Long (100% over 21bp)
GCAGTGGTATCAACGCAGAGTACGGGCTGAGGGAGTAGAGTCCTGAGGAC24260.1378254820341132Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGACTCATGATGCACTGTGTAGCAA24080.13680286922429705Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGAGAAGGTGGTGTGAGGCCATCA24010.13640518646492408Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGATCTGGTAAAGCTCCCATCCTG23870.13560982094617818Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGTCAGAGGCCCCATCTCAGACC23830.13538257365510792Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCTGCTGAGGGAGTAGAGTCCTGAGG23360.13271241798503236Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGATCTCAGAGAGGAGCCTTAGC22370.1270880475310434Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTCACCATTACCGCGGACGAGTCCACGACAA21900.12441789186096784Clontech Universal Primer Mix Long (100% over 21bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGTCATCCCTCCTCGCTGGTGAA20980.11919120416635184Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGGAGTAGAGTCCTGAGGACTG20930.11890714505251401Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGAGGGAGTAGAGTCCTGAGGACTGTA20880.11862308593867618Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGATGGGCACCAGGCTCCTCTGCTGG20830.11833902682483836Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGATCACATAACAACCACATTCCTCC20770.11799815588823297Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGCTCTGGGAGAAGAGCCCCAGCC20770.11799815588823297Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGGCCATCACGGAAGATGCTGCTG20690.11754366130609245Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGACTGTGCGAGAGTTGGGAAGTATG20570.11686191943288166Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGATGTTAGGGCTTTTGATATCTGGG20540.11669148396457896Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGTCACAGTGACACTGATCTGGTAAA20450.11618017755967089Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGCCATCACGGAAGATGCTGCT20390.11583930662306548Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGTCACACAGGAGCTGGAGTCTCCCA20080.11407814011727097Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGCTTCTGCTGCTTCTGGGGCCAGG19910.11311233913022237Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAAGACCCCTCCGTCATGCAGCA19370.11004450070077385Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCACACAGTATTCACAGAAGTTCGAG19360.10998768887800627Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGAGAGGAGCCCAGCACTAGAAG19270.10947638247309818Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGAGAGAGGAGCCTTAGC19110.10856739330881712Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCTCACAGTGACACTGATCTGGT19030.10811289872667662Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGGCCAGGGAACCCTGGTCACCG18910.10743115685346583Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGATCTGGTAAAGCCCCCATCCTG18760.10657897951195236Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGTATGGACGTCTGGGGCCAAGGGACC18750.1065221676891848Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGCATCACCCAGCAACCACATC18400.10453375389232Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGGAGACACAAGATCCTGCCCTG18390.10447694206955245Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGTGCAGTGCTGCCTGCCCCACTG18170.10322708196866599Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGTCTGCCCACAGCAGGGCTGGG18160.10317027014589844Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCTTGGTGCTGTCGTCTCTCAAC18050.10254534009545523Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCCCAAGAAACATGTACTATTTTAAC18050.10254534009545523Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGAACTGGCAGACACCTGCCTGA17980.10214765733608228Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCATTAATCTGGGTGTAATGGGGCTC17920.10180678639947688Clontech SMARTer II A Oligonucleotide (100% over 23bp)

[FAIL]Adapter Content

Adapter graph