FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001880345

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880345
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences854204
Sequences flagged as poor quality0
Sequence length250
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGTGGTATCAACGCAGAGTACGGGGGAGGCCCAGCAGAGCAGAGGCCA381984.471765526736003Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGCCAGGCACCCATAAAAGGCTGG258113.021643541823733Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGCCTGGGCGCAGCCGTCGGCGC246462.885259258912391Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGACACTGGGGCTGCTCCACAGCAT233282.730963563738873Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGCTCTGGGAGAGGAGCCCAGCA199272.332815112080955Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGGGGAGGGGCTGAGGCCCAGC190902.2348291508819904Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTGCAGGCTATGACCAGGGCCCTGGGCAAGT187432.1942065361435907Clontech SMARTer II A Oligonucleotide (95% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGCCACTGAGGAGCTGAGGTTC176662.0681242419843504Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGCTCATGGGGTAGGATTCCTCT167021.9552706379272398Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGGAAGAGTCCAGGGAGGCCCA161571.891468548496612Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGAATGGTCATAATCACTGCCAG158331.8535384990002388Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGGGGAGGGGCTGAGGCCCAGCA152241.7822440541135374Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGAGCAGAGGCCACTGAGGAGCT151941.7787320124935027Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGTGCGTTCAGGGAACTGACCCAGC150761.7649179821213667Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGGTTCCGGAGAGGCTTCCAGA141941.6616639584923507Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAAGCTTCAGGTGAGAGGCCCAG139941.6382503476921204Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGAGCTGAGGTTCTGGAGAGGC137101.605003020355793Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGTGAGAGGCCCAGGTATTGAG128261.501514860618775Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGGCCACTGAGGAGCTGAGGTTCC115331.3501458667952853Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGATCACATAACAACCAGATTCCTC100241.1734901733075471Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGTTCCGGAGAGGCTTCCAGAGCA98041.1477352014272937Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCATCACATAACAACCAGATTCC89971.053261281848364Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCGTTCAGGGAACTGACCCAGCA86061.0074876727339137Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGTTTCCAGAGCAGGAGCAGTGCAGG69950.8188910377380578Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGATCACACAACAGCCACATCCCTCC66340.776629470243642Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGGAGAGGAGCCCAGCACTAGAA65780.7700736592195776Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGCAGCCTCAGGTGAACAGGGCCGGT63930.7484160692293644Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGAGCAGGAGCAGTGCAGGGACG62540.7321436097232044Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGGTTCCGGAGAGGCTTCCAGAG59720.6991304184948794Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGGCCACTGAGGAGCTGAGGTT58340.6829750270427205Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGCTCTGGGAGAGGAGCCCAGCACT56480.6612003689985062Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGAGCAGGAGCAGTGCAGGGACGG55190.6460985900323576Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGAGAGGAGCCCAGCACTAGAAG51060.5977494837298819Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAAAAGAGCAGCACACAAGGTCT38610.4519997564984477Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGGTTCTGGAGAGGCTTCCAGA34170.4000215405219362Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGTCAGCTGGAGAGATGCCCAG31630.3702862548056436Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGTGCAGTGCAGGGACGGGAGGA31490.3686473020496275Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGCACGTGCGGGGTAGAAGCTGAGGA31300.36642300902360564Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGTCTACTCCCTCAGCAGCGTGGA29800.3488628009234328Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGACTCTGAGAGGGGCTGTGCTGAG26130.30589882510501004Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGACTGAGGAGCTGAGGTTCTGGAG24360.2851777795468061Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGGATCCGGGAGCTCATCCAGGAG24040.2814316018187693Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGACTGAGGAGCTGAGGTTCCGGAG21150.24759893421243637Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGCTCATCCAGGAGGGGCACAT20220.23671160519032922Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGGGCTGTGCTGAGAGGCGCTGC20200.23647746908232692Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCTGAGAGGCGCTGCTGGGCGTC20160.23600919686632232Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGGCTTCCAGAGCAGGAGCAGT19400.22711202476223477Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGACGTGAGCCACCGCGCCCGGCT19220.22500479979021404Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGACTCCTGGTTCTGGGTGCTGG18960.2219610303861841Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGGCAGGGGCTTCCAAGCCAACA18950.22184396233218295Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGAGTGAGCAGGGGGCAGGCATTG18090.21177610968808389Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGATGAGAGGCCCAGGTATTGAG17860.2090835444460574Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCCGCCGGGGGACCGGGGACGAG17470.20451789034001247Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGTGCTGAGAGGCGCTGCTGGGCG17260.20205946120598825Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGTTCCGGAGAGGCTTCCAGAGC16260.19035265580587307Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGTCTGAGGACACGGCCACATATTAC15770.18461632115981663Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCTGGCTTCTATCTCTGTGCCTGGAG15530.18180668786378898Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGCTTCCAGAGCAGGAGCAGTGC15340.17958239483776708Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGACCGGTTTTTGTCCTGGGCCTCCA15310.17923119067576365Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGGGCAGTGTAGCCACAGGTGAGC14910.17454846851571756Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGTCTACTCCCTCAGCAGCGTGGT14710.17220710743569453Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGCAGGGGCAGGTGTGGCTGCA14690.1719729713276922Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGCTGAGTCTGGGACAGCAGAG14650.17150469911168761Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCGAGGGGAGGGGCTGAGGCCCA14390.16846092970765766Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGGCGCTGCTGGGCGTCTGGGC14320.16764145332964958Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGATTGAGAGGCTGAGACCACGGGC14200.16623663668163577Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGACTGAGGAGCTGAGGTTCTGGAGA14200.16623663668163577Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGGGGCTGAGGCCCAGCAGAGC14170.1658854325196323Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGCCTTAGAGTCGAGGACACGGCTGT13990.16377820754761158Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGAGGACCAAGCAGCCACAGGTGCACA13880.1624904589535989Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCAGGACACACCAGAGGCTGACT13640.15968082565757127Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGTACTTCGGCGCCGGGACCCGGC13420.15710532846954592Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGAATGGTCATAATCGTTGCCAG13400.1568711923615436Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGCCCAGCAGAGCAGAGGCCAC13170.15417862711951713Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGGAGAGCGATGGGGCTCTCAGC13130.1537103549035125Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGTACTTCGGCGCCGGGACCCGG13120.15359328684951135Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGCTTCCAGAGCAGGAGCAGTG12840.1503153813374791Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGATGAGAGGCCCAGGTATTGA12660.14820815636545837Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGCTGACCGTACTGGGTAAGGA12540.14680333971744453Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGTTTTCGCGGGACCACCCGGGC12360.14469611474542382Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGAGGCTTCCAGAGCAGGAGCAG12160.14235475366540076Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGTTCTGGAGAGGCTTCCAGAG12140.14212061755739847Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGAGCTGAGGTTCTGGAGAGGCT11650.13638428291134203Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGAGCAGTGCAGGGACGGGAGG11640.13626721485734086Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCACATGGGCAAGGGCAAGAGGC11490.1345111940473236Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGGGGGAGGGGCTGAGGCCCAGC11390.13334051350731208Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGAGGGGCTGTGCTGAGAGGCGC11230.13146742464329364Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGACGGGCAGAATGGTCATAATCGT11080.12971140383327637Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGTAGAGACAGGGTTTCACCATG11060.12947726772527404Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTGAGCAGGGGGCAGGCATTGGAGTTCAGGG10830.12678470248324755Clontech Universal Primer Mix Long (100% over 21bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGCCACTGAGGAGCTGAGGTTCT10620.12432627334922337Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCTCCCGCTGAAGCCCCGGAACT10440.12221904837720263Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCACGTGGTCGGGGTAGAAGCCTGTG10140.11870700675716808Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGTATTGAGAGGCTGAGACCAC10090.11812166648716231Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGAGGACCTGAAAAACGTGTTCCCACCCGAGG9950.11648271373114619No Hit
GCAGTGGTATCAACGCAGAGTACGGGGGCAAGGGCAAGAGGCTCTGTTGG9730.11390721654312086Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGAGCTGAGGTTCCGGAGAGGCT9610.11250239989510702Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGTGGGGGTCAGAAGCTTCAGTCT9610.11250239989510702Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGACAAATGGCAGCTGACAGCGTG9450.1106293110310886Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGCAGTACTTCGGCGCCGGGACCCG9330.10922449438307477Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGTCACCACGTTGCTGAGGGAGTAG9120.10676606524905058Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGACCAGAAGAAAAGGGAACTTCAGGA8890.10407350000702408Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGACTGGACACTGGTGCTGCTCC8850.10360522779101948Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGAGGCCACTGAGGAGCTGAGGT8820.10325402362901602Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGACTGCGCTCGGGTTTTTGTGCG8730.10220041114300565Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGACTTATTTGGTATGATGGAAATAA8690.10173213892700105Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGTAAGCGGGGGCTCCCGCTGAAG8680.1016150708729999Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAAGACAAATGGCAGCTGACAGC8660.1013809347649976Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGTGAACCGAGGGGCTTGTCCAGG8600.10067852644099068Clontech SMARTer II A Oligonucleotide (100% over 23bp)

[FAIL]Adapter Content

Adapter graph