FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001880358

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880358
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1757085
Sequences flagged as poor quality0
Sequence length250
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGTGGTATCAACGCAGAGTACGGGACCCGGCTCTCAGTGCTGGGTAAG571103.2502696226989585Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCTCATGTTCACAGAGGGCCTGG443672.5250343608874926Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCACAGATACAGAAGACCCCTCC435582.4789921944584354Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGACAGATACAGAAGACCCCTCCGT423202.408534589960076Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGAGCTGGAAACACCTCCATCCT403012.293628367438115Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGACTAATGAGAGTTTCCTACCTCGAG380272.164209471937897Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGCTGTAGCATCAGCTTTGTCCT345761.967804630965491Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCTTGTTGGTGGACAAAGGAAGTTCT338491.9264292848666968Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGATGTTCACAGAGGGCCTGGTCTGG332051.8897776715412176Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGTGCTGGGTAAGCTGGGGCCGC321141.8276861961715Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGAGGACCAAGCCCTGAGCACA311541.7730502508415926Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGACAGTGACCCTGATCTGGTAAAG291041.65637974258502Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGTTCACAGAGGGCCTGGTCTGGAA263101.4973663766977694Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGTCACTGTGGGAACTGCTCTGTG248121.4121115370058934Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGATGCTCACAGAGGGCCTGGTCTA240901.371020753122359Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGCCCCGACGTGCTGCAGCAAGTGC239841.3649880341588483Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGTAGAAGCCTGTGGCCAGGCAC228081.298059001129712Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCACGTGGTCGGGGAAGAAGCTCCAG181671.033928352925442Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGCTTTTCTCAGGGGAGAGGCCATC172920.9841299652549534Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGGTCTCAGAATGACGCCCTTG167550.9535679833360367Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGACAAAGGAAGTTCTAGGATTTGG155670.8859560009902765Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGACATTAGGCCAGGAGAAGCCCCC142430.8106039263894461Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGAGCCCAGCACCTCACCCAGAG138040.7856193638896241Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCAGAACTCACAGAAGCTGGAGTTGC114470.6514767356160914Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGCTCTTAGAGCAACCCTAGCCCCAT101080.5752709743694813Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGTCCCTTTCCAGAGGACCTGAAAAAC98100.5583110663399893Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGACCCCAAAATTCCAGGTCCTGA94280.5365705130941303Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCACACACAGAGCCCCTACCAGAACC92730.5277490844210724Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGTCTTCCCTTTCCAGAGGACCTGAAA89780.5109599137207363Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCCTCGAGTTTCAGGATTACATAGCC87140.4959350287550119Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCACGTGGTCGGGGTAGAAGCCACGT77940.44357558114718415Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGATGATCAGACAAGCCTCAGTAAAA74870.4261034611302242Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGACCCTGGCTCCAACCCCTCTTCCCTT74320.42297327676236496Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGTTATACCACTAATGAGAGTTTCCTA72740.41398111076015104Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCACGTGGTCGGGGAAGAAGCTCCCT72550.4128997743421633Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGACCCTAGCCCCATTACCTCTTCCCT68390.38922419803253683Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGAGGAAATCAAATAATGGCAATG68130.38774447451318517Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCCACTGTGCACCTCCTTCCCATTAC53210.3028311094796211Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGTACCAGGACCAGACAGCTCTTAGAG53020.3017497730616333Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGTGATTATTACCTCACATGCAGAAAA52590.2993025380103979Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGAGTGCCTAACTGGGGGATGGACAGA52000.2959447038703307Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGTCTCAGAGCAACCCTGGCTCCAACC51390.2924730448441595Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGAGAGCTCAGGTGTGATCCAATTTCA47720.2715861782440804Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGATCCAGAGCTGGAAACACCTCCA47370.26959424273726085Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGCTTTTGCTCACAGTGACCCTGAT46740.2660087588249857Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGTCTTCCCTTTCCAGAGGACCTGAAC46060.2621387126974506Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGCATAGCCATGCACCAAGCAAGGCT45810.26071590162115094Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGACCAGGACCAGACAGCTCTTAGAGC45790.260602076735047Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCCAGGACCAGACAGCTCTTAGAGCA45630.25969147764621514Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGCCAGGACCAGACAGCTCTTAGAGCAA45320.2579271919116036Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGAGCCCCATTACCTCTTCCCTTTCCA45180.2571304177088758Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCTAGCCCCATTACCTCTTCCCTTTC45050.25639055594919996Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCCTTGAGGGGCTGCGGGTCTGTGCT42560.24221935762925528Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCACACAGAGCCCCTACCAGAACCAG42490.24182097052789137Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGCCCCATTACCTCTTCCCTTTCCAGAG41550.23647120088100462Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGATACGCAGTATTTTGGCCCAGGC41430.2357882515643808Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGCCCCTACCAGGACCAGACAGCT41310.23510530224775694Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCAGATAAATTATTTGGATAGATGAT39770.22634078601775098Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGCCTGGAATGTTAGGCAGTGCCTAACT38380.21842995643352484Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCAACCCTAGCCCCATTACCTCTTCC37700.21455991030598975Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCACATACACAGAGCCCCTACCAGGA36680.20875484111468712Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGACCCCACTGTGCACCTCTTCCCTT36570.20812880424111524Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGTCACCACGCTGCTGAGGGAGTAG35130.19993341244162915Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCTCCAACCCCTCTTCCCTTTCC34940.19885207602364144Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGATTACGGGGAGTGCTGGGTAAGCTGGGGCCGC34460.19612027875714608Clontech SMARTer II A Oligonucleotide (95% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCTTCCCTTTCCAGAGGACCTGAAAA33980.19338848149065072Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCCAACCCCTCTTCCCTTTCCAGAGG32840.18690046298272422Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGAGTGCCTGGAGAGGACCTGAAAAACG32720.1862175136661004Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGATTACATAGCCATGCACCAAGCA32500.1849654399189567Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGCAACCCTAGCCCCATTACCTCT32140.18291659196908516Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGTGATCAGACAAGCCTCAGTAAAAAC30330.17261543977667557Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCACAGATAAATTATTTGGATAGATG30230.1720463153461557Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCACCTCCTTCCCATTCACCCACCAG29680.16891613097829644Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGCACGTGGTCGGGGTAGAAGCTCTT28850.16419239820498155Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGCCTACCAGAACCAGACAGCTCTCAGA28160.16026543963439446Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCACAGAGCCCCTACCAGGACCAGAC27420.15605391884854744Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCAATTTCTGGACATGATAATCTTTA27190.15474493265835176Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGCATTACCTCTTCCCTTTCCAGAGG26780.1524115224932203Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGTCCCTTTCCAGAGGACCTGAACAAG26780.1524115224932203Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGACCGGGGAGCTGTTTTTTGGAGA26520.15093179897386866Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGAGCATGACACTGCAGTGTGCCC25950.1476877897199054Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGTCTGGGACAGCAGAGCGGGC25690.14620806620055377Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGATTATTTGGATAGATGATCAGACAA25410.14461451779509812Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGACCTCTTCCCTTTCCAGAGGACCTG25320.14410230580763025Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCCTCTTCCCTTTCCAGAGGACCTGA25060.1426225822882786Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGCAGGCTGACCGTGCTGGAGGACCTGA23840.1356792642359362Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCCCTACCAGGACCAGACAGCTCTTA23770.13528087713457232Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGCCTAGCCCCATTACCTCTTCCCTTTC23230.13220760520976504Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGCTAGCCCCATTACCTCTTCCCTTT22150.12606106136015047Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGAACCCTGGCTCCAACCCCTCTTCCC21860.12441060051164286Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGCTTAGAGCAACCCTAGCCCCATTA21310.1212804161437836Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGACCCTAGCCCCATTACCTCTTCCCTT21280.12110967881462764Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCACACACACAGAGCCCCTACCAGAA20940.1191746557508601Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCTCACACATACACAGAGCCCCTACC20920.11906083086475612Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGCCCCTACCAGAACCAGACAGCT20720.11792258200371639Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGTCACCACGCTGCGAGGGAGTAG20630.1174103700162485Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCCTACCAGGACCAGACAGCTCTTAG20500.11667050825657267Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCACGTGGTCGGGGTAGAAGCCCATT20090.11433709809144123Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCACACATACACAGAGCCCCTACCAG19760.11245898747072565Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCTTCCCTTTCCAGAGGACCTGAACA19620.11166221326799784Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGCATCTTGATTTAAAAAAGGAAAAT19350.11012557730559422Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCCCATTACCTCTTCCCTTTCCAGAG18970.10796290446961872Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCACGTGGTCGGGGTAGAAGCCTAGC18820.10710921782383892Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCAGCTCTCAGAGCAACCCTGGCTCC18610.1059140565197472Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAAATCAAATAATGGCAATGAGGA18530.10545875697533129Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGTCCCTTTCCAGAGGACCTGAACAAGG18530.10545875697533129Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCTCCAACCCCTCTTCCCTTTCCAGA18440.10494654498786342Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCAGTTTCTGCAAAGTCAGAATGGTG18170.10340990902545978Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGACACGGCTCACCGTGCTAGAGG17930.1020440103922121Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGTATACATCTTGATTTAAAAAAG17620.10027972465760052Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGGAGACATCACCTGGAATGTTAG17610.10022281221454853Clontech SMARTer II A Oligonucleotide (100% over 23bp)

[FAIL]Adapter Content

Adapter graph