FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001880393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2047964
Sequences flagged as poor quality0
Sequence length250
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGTGGTATCAACGCAGAGTACGGCTATGACCAGGGCCCTGGGCAAGTC24321211.875794691703565Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGTCAGGGGCTTCAGGAGGTTCGG1813048.852889992206894Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGTGCTTTCTGAGAGTCATGGAC1525117.446957075417342Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGTGTCCACTGGTCAAGCCAGGCA1461577.136697715389529Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGGAGGCCCAGAAAGGCCCAGA1158785.658204929383524Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGTCTCAGAGAGGAGCCCTAGC1061775.18451496217707Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGGGGGCCAGAAGCTTCAGGTGA484492.3657154129662437Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGGCCCAGCAGAGCAGAGGCCA393571.9217622966028698Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGCCAGAGCTGAGGCCAAGCTAGAGG300791.4687269893416095Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCACCAGCCCACCTCCTCCCTCTCTC165130.8063130015957312Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGGGGAGGGGCTGAGGCCCAGC156920.7662244062883918Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCACCGCGGTCACATGGCACCACCTC153620.7501108417921408Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGAGCAGAGGCCACTGAGGAGCT147570.7205693068823475Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGGGGCCAGAAGCTTCAGGTGAG130080.6351674150522177Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGAAGGGAAGGCATTCCAGGGC127480.6224718793885049Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGCATTCCAGGGCTCAGAGCTG125120.6109482393245194Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGGGAGTAGAGTCCTGAGGACTGT104380.5096769279147485Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCACACCGCGGTCACATGGCACCACC96240.469930135490663Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGCTCTGTCCCACACCGCGGTCACAT88110.43023217204989933Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGTCTACTCCCTCAGCAGCGTGGA82680.40371803410606827Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCCACACCGCGGTCACATGGCACCAC82650.40357154715610233Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCTGCGCCCTGGGCCCAGCTCTGTCC77070.37632497446244173Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGGAGCTGAGGTTCCGGAGAGG74730.36489899236510015Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGCTCTGTCCCACACCGCAGTCACAT65520.31992749872556353Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGTAGAGTCCTGAGGACTGTAG64660.3157282061598739Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGCAGCTAGGAATAATGGAATAGGA62420.30479051389575207Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGAGCTGGGCTCTCAGGCAGGGGC61820.3018607748964337Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGTCTGTCCCACACCGCAGTCACATGG57270.27964358748493623Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCCCAGCTCTGTCCCACACCGCAGTC55650.2717332921867767Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGTCACCACGCTGCTGAGGGAGTAG54370.26548318232156426Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGGCTCAGAGCTGGGCTCTCAG54030.2638229968886172Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGTTCCGGAGAGGCTTCCAGAG48630.23745534589475203Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGAAACAGGGGAGAGCATCAGA47960.2341838040121799Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGCAGTGAACCGAGATCACACCATTG47360.23125406501286155Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGGGGGGCCAGAAGCTTCAGGTG46490.22700594346384992Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCCAGTGGGAGGTTGCAGAGCAG44730.2184120423991828Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGCATGGCACCACCTCTCTTGCAGCCT43670.21323617016705373Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGGCAGGGGCAGGTGTGGCTGC41330.20181018806971215Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGCAGGGGCAGGTGTGGCTGCA40490.1977085534706665Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGAGTAGAGTCCTGAGGACTGTA39540.1930698000550791Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGGCTTCCAGAGCAGGAGCAGT38200.18652671628993478Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGAGGGGCCTCTGCGCCCTGGGCCCAG37390.182571568640855Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAGCTGGGATGGAGAAGGGAAGG36580.17861642099177524Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGGACTGTAGGACAGCCGGTCACA34550.16870413737741483Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGTTCCGGAGAGGCTTCCAGAGCA33720.1646513317616911Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGAAACAGGGGAGAGCATCAGAAG33640.16426069989511533Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGCCAGTGGGAGGTTGCAGAGCAGG33420.16318646226203196Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGGAGGAACGTGTGCTTGAGACCA33320.16269817242881224Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGGAGGTTGCAGAGCAGGGGACA33180.16201456666230463Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCTGGGCTCTCAGGCAGGGGCAG31460.15361598153092534Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGGGGAATATCGCTACTTTGACTA31430.15346949458095943Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGGCCAGTGGGAGGTTGCAGAG29670.14487559351629228Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGTAGGCAAGGGGCTCTGTTGGGGAGA28890.14106693281717841Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCAGAGTCAGCCAGAGCCTGTGG28650.13989503721745108Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGAGGGCCGGTGGGAGGCAGGACGA27050.13208239988593548Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGGGGACCAGGGCAGAGCCGCCGC25590.12495336832092752Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGTCGGGGAAGAAGCCCTCTCTTGCA25430.12417210458777596Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGAGGGGACCACGGTCACCGTCTCTTC25320.12363498577123426Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCTCAGGGGACCAGGGCAGAGCC24780.12099822067184775Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGACAGCTCCTGGAGCTCAGGGGACC24560.11992398303876436Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGCCTGCAGAAGGGCACCACAGGGC24080.11758019183930968Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGTCACCACGCTGCTGAGGGAGTA23810.11626180928961641Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGGGCAGAGCAGGGGACAGCTCCTGG23220.11338089927362004Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GCAGTGGTATCAACGCAGAGTACGGGAGGAAACAGGGGAGAGCATCAGAA22180.1083026850081349Clontech SMARTer II A Oligonucleotide (100% over 23bp)

[WARN]Adapter Content

Adapter graph