FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001880475

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880475
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1385364
Sequences flagged as poor quality0
Sequence length250
%GC53

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC14285710.311874713071798No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGAGCC1269369.162646062695435No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC764115.515590126493832No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC670574.840388518829708No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTGTCACAGTGAGCC547753.9538345156940706No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACGGTTAACC538723.888653090451318No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACTGTCAGCC465363.3591171706497356No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC349792.524895984015753No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACAGTGAGCC304462.197689560288848No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCCAAGACAGAGAGCT273311.9728389073196646No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTGGAAAGGGAAGAG112990.81559792227891No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTAGCACGGTGAGCC92350.6666118074383339No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTAGGATGGAGAGTC61590.4445762990809636No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACTGTGAGTC47920.3459018712771517No Hit
AAGACCGATGCGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC30430.2196534629166053No Hit
AAGACCGATAGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC25330.18284003337750945No Hit
AAGACCGATGAGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC19760.1426339936652028No Hit
AGCGACCTCGCGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGAGCC19330.1395301162726908No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACCAGGAGCC18970.13693152124640168No Hit
AGCGACCTCAGGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGAGCC18580.13411637663458845No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGACGAGACGGTGACCAGGGTTCC16240.11722550896370917No Hit
AAGACGGATGCGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC16010.11556529547469113No Hit
AAGAGCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC14820.10697549524890208No Hit
AAGACCGATCGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC14360.103655068270866No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCCACGACAGAGAGCT13890.10026245809765519No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)