FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001880506

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880506
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1480634
Sequences flagged as poor quality0
Sequence length250
%GC54

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTAGCACGGTGAGCC1051057.0986482817495755No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACCAGGAGCC775695.238904415270755No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACGGTTAACC658414.446811298403251No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTAGGATGGAGAGTC589453.98106486815783No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC450903.045317073631971No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC363322.4538137041294474No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACTGTGAGTC252641.7062960866763832No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACTGTCAGCC245431.6576007304978813No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGAGCC237601.604717978919841No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC232121.5677068066787605No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACAACGACCAGACTTCC230721.5582513977120611No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAAAGTTCC202251.3659689025106811No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC184671.2472359813431273No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGACTTCC117030.7904046509805935No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACAACGACCAGACTTCC116900.7895266487194No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGGGATTCC114760.7750733807274451No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAAAGTTCC103940.7019965771419541No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACTGAGAGCC102010.6889616204950042No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACAATGACCAGGGTTCC86850.5865730491127449No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTGTCACAGTGAGCC76620.5174810250203629No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAAGAGACGGTGACCATTGTCCC74540.5034329888412666No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGTACGGTCAGCC67790.4578444098946802No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACGGTCAGCC64000.4322472670491155No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGGGATTCC61810.41745630587977856No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGACTTCC59040.39874810385280895No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGATGACCGTGGTCCC55410.37423157917486694No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGGGCGCCGCCACTGGACGGAAGC52630.3554558385124211No Hit
AGCGACCTCGGGTGGGAAACCCCTTGTTCAGGTCCTCTACAACGGTTAAC46950.317093893561812No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACAATGACCAGGGTTCC45010.3039913982793857No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTGGTCAATATCTGA42180.28487796443955765No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAAGAGACGGTGACCATGGTCCC39590.26738545785116374No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAAGAGACGGTGACCATTGTCCC36680.2477317149275243No Hit
AAGACCGATGGGCCCTTGGTGGAAGCTGAGGAGACGGAGACCAGGATTCC34470.23280567648723455No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCCAAGACAGAGAGCT31060.20977500178977382No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGATGACCGTGGTCCC29480.1991038973844988No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGGGCGCCGCCACTGGACGGAAGC27980.18897310206303516No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTGGAAAGGGAAGAG27580.18627155664397818No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTCCAGGCACTGTCC25300.17087274775535344No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACAGTGAGCC24890.16810366370082006No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACACCGACCAGACTTCC19920.13453696186903719No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAAGAGACGGTGACCATGGTCCC19860.13413173005617865No Hit
AAGACGGATGGGCCCTTGGTGGAAGCTGAGGAGACGGAGACCAGGATTCC17290.1167743007387376No Hit
AGCGACCTCGCGTGGGAACACGTTTTTCAGGTCCTCTAGCACGGTGAGCC16790.11339736896491638No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACGGTTACCC15550.10502257816583976No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)