FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001880507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1179127
Sequences flagged as poor quality0
Sequence length250
%GC54

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACGGTTAACC826727.011288860317845No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGAGCC717096.0815332021063035No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGCTGACCAGGGTTCC662065.614831990107936No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACTGTGAGTC490294.158076271682354No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACCAGGAGCC459953.9007672625595036No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTAGCACGGTGAGCC440493.7357299086527576No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC414503.5153125999150223No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGCTGACCAGGGTTCC325282.7586511037403096No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGTACGGTCAGCC218341.8517089338128974No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCC209811.779367277655418No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACTGTCAGCC197551.675392048524035No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCCAAGACAGAGAGCT161681.3711839352334396No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTAGGATGGAGAGTC128671.0912310548397246No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAAGAGACGGAGACCGTTGTCCC85480.7249431146941763No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGGGCGCCGCCACTGGACGGAAGC79300.6725314575953226No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAAGAGACGGAGACCGTTGTCCC42650.3617082807873961No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGGGCGCCGCCACTGGACGGAAGC41600.3528033875909889No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGCATTCC27140.2301702870004673No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTCCAGGCACTGTCC23560.19980884162605048No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTGTCACAGTGAGCC23350.19802786298676903No Hit
AGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACGGTTACCC19470.1651221624133787No Hit
AAGACCGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCGTGGTCCC17640.1496022056996405No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACGGTCAGCC17130.1452769718613856No Hit
AAGACGGATGGGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGCATTCC14020.11890152629869387No Hit
AAGACCGATGGGCCCTTGGTGGAGGATCCTAAAATGGACACAGGGCTCCC13330.11304973934105486No Hit
AGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTCCAGGCACTGTCC12440.10550178225076688No Hit
AGCGACCTCGCGTGGGAACACCTTGTTCAGGTCCTCTACAACGGTTAACC11970.10151578243904177No Hit
AAGACCGATGCGCCCTTGGTGGAGGCTGAGGAGACGCTGACCAGGGTTCC11960.10143097393240932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)