FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001880536

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880536
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27057869
Sequences flagged as poor quality0
Sequence length100
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCGCGCCTGCCGCGCGTGTGGCGTGCGCCCCGCGCCGTGGGGGCGG467230.1726780479275733No Hit
CGCGCGCCTGCCGCGCGTGTGGCGTGCGCCCCGCGCCGTGGGGGCGGGAA463420.17126995477729604No Hit
GGCGGCTCCGCCGCCGCGTCCTCGGACCCGTCCCCCCGACCTCCGCGGGG402830.14887720832708592No Hit
CTCCGGGCTCCTCGGGGTGCGCGGCTGGGGGTTCCCTCGCAGGGCCCGCC369440.13653699040378975No Hit
CCGGGCTCCTCGGGGTGCGCGGCTGGGGGTTCCCTCGCAGGGCCCGCCGG353650.13070134976261435No Hit
CTCGGGCCGAGTTCCCGTGGCCGCCGCCTGCGGTCCGGGTTCCTCCCTCG340960.1260114017109034No Hit
CCTCCCTTCCCCAGGCGTCCCTCGGCGCCTCTGCGGGCCCGAGGAGGAGC331920.12267041428872319No Hit
GCCGAGTTCCCGTGGCCGCCGCCTGCGGTCCGGGTTCCTCCCTCGGGGGG309490.11438077403656585No Hit
CGCGCCTGCCGCGCGTGTGGCGTGCGCCCCGCGCCGTGGGGGCGGGAACC282510.10440955272567844No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)