FastQCFastQC Report
Sun 2 Apr 2023
EGAF00001880542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001880542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27013975
Sequences flagged as poor quality0
Sequence length100
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGAGTTCCCGTGGCCGCCGCCTGCGGTCCGGGTTCCTCCCTCGGGGGG351080.12996236207370443No Hit
CCTCCCTTCCCCAGGCGTCCCTCGGCGCCTCTGCGGGCCCGAGGAGGAGC338970.12547949718617865No Hit
GGCGGCTCCGCCGCCGCGTCCTCGGACCCGTCCCCCCGACCTCCGCGGGG329970.12214788826894228No Hit
CTCCGGGCTCCTCGGGGTGCGCGGCTGGGGGTTCCCTCGCAGGGCCCGCC323730.11983797275299174No Hit
CCGGGCTCCTCGGGGTGCGCGGCTGGGGGTTCCCTCGCAGGGCCCGCCGG314920.11657669780178594No Hit
CGTCGCGCGCCTGCCGCGCGTGTGGCGTGCGCCCCGCGCCGTGGGGGCGG310260.11485166474019465No Hit
CGCGCGCCTGCCGCGCGTGTGGCGTGCGCCCCGCGCCGTGGGGGCGGGAA292910.10842906310530012No Hit
CTCGGGCCGAGTTCCCGTGGCCGCCGCCTGCGGTCCGGGTTCCTCCCTCG283080.10479020581014085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)