FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001894733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001894733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1599626
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT36480.22805330746061891No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC31140.19467050423036383No Hit
ATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGAT27450.17160261211058084No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC23500.1469093400582386No Hit
CCCATATTCAGACAGGATACCACGTGTCCCGCCCTACTCATCGAGCTCAC22670.14172062719660722No Hit
TCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGT21180.13240594989078697No Hit
ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAG20070.12546682787101485No Hit
AGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTA18540.11590209211403166No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT18240.11402665373030946No Hit
GGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA17120.10702501709774659No Hit
ACACTGAATTCACCCCCACTGAAAAAGATGAGTATGCCTGCCGTGTGAAC17070.10671244403379289No Hit
ATTCTAAGCAGAGTATGTAAATTGGAAGTTAACTTATGCACGCTTAACTA16220.10139870194658002No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)